Pseudomonas syringae CC1557: N018_08815
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Entry
N018_08815 CDS
T03014
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psyr
Pseudomonas syringae CC1557
Pathway
psyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N018_08815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyr03400
]
N018_08815
Enzymes [BR:
psyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N018_08815
DNA repair and recombination proteins [BR:
psyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N018_08815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AAA_22
DUF6732
Motif
Other DBs
NCBI-ProteinID:
AHG40348
UniProt:
W0MTG5
LinkDB
All DBs
Position
complement(1836874..1840326)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVLRLPHLSAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKF
FAPTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELVHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPF
RIDLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFR
RSPIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVTSQQDVDAGAGRERFPAQTLPDL
SIEAKASQPLAALAKFLDDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDGWLDFVDG
KDRLAITIAPLDEGLLLEQPALALVAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTEL
REGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDD
EMAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF
PFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP
TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCASELAELVPEAR
IGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRVPALIPEAYL
PDVHTRLILYKRIANAADEDALKDLQVEMIDRFGLLPEPTKNLVRITLLKLQAEQLGIKK
VDGGPQGGRIEFATETPVDPLTLIKLIQSQPNRYKFEGATLFKFMVPMERPEERFNTIEA
LFERLTPKTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgccagttctgcgtctaccgcatctttctgccgctgctggcaaacaacactggggcaat
ctgcccggtgctgcactgagcctggcaattgccgaggccgccagcgcagccaaacgcttc
accctgcttttgaccgccgacagccagagcgccgagcggcttgagcaagagctgaagttt
tttgcacccacgctgccggttctgcacttcccggactgggaaaccctgccctacgatctg
ttttcgccgcatcaggacatcatttcccagcgcatcgccagcctttatcgcttgccggaa
ctggtgcatggcgttttggtagtaccaatcactactgccctacacagactcgcgccgacc
aaatttctgctcggcagcagcctggtgctggatgtcggccagaagctcgacgtggaggcc
atgcgcacacgcctggaagccagcggctatcgctatgtcgacacggtttatgagcacggc
gagttcacggtgcgcggtgcgctgatcgatctgtttccgatgggcagcaagctgccgttc
cgtattgatctgtttgatgacgaaatcgaaaccctgcgtaccttcgatccggacacccag
cgttccatcgacaaggtcgaatcggtgcgactgctgccagcccgtgaattcccactacag
aaagaagaagtcacgcgcttcaaggcccgcttccgcgaacgcttcgacgtggacttccgc
cgcagcccgatctttcaggacttgagcagcggcattacgcctgccggtatcgagtactac
attccgctgttcttcgaagaaacctcgaccctgttcgattacctgccacaggacactcag
gtgttctcgctgcccggtatcgagcaagcggcagagaacttctggaacgacgtgcgcaat
cgttacgaagagcgtcgcgttgacccggcccggccattgctgccgccagccgaattgttc
ctgccggtagaagactgcttcgcgcgcctgaaaaactggccccgtgtggttaccagccag
caggacgtcgacgcaggcgccggacgcgagcgttttccggcgcagactctcccggacctg
tccatcgaagccaaggccagccagccattggcggccttggcaaaatttctcgacgacttc
cccggccgcgtgctgttcaccgccgaatccgccggacgccgggaagtgttgctggaactg
cttgaacgcctgaagttgcgcccgaagacagtcgacggctggctggacttcgtcgacggc
aaagatcgcctggcaatcaccatcgcaccgctggacgaaggcctgctgcttgagcaaccg
gccctggcgctggtcgcggaaagcccgctgttcggtcagcgcgtcatgcagcgccgtcgc
cgcgagaaacgcacagacggtggcaacaacgacgcggtcatcaagaacctgaccgagttg
cgcgaaggcgcgccagtggtgcatatcgaccacggcgtcggacgctacctggggctggcg
acgctggaagtcgaaaatcaggtcgccgaatttctgatgctggcctacgccgaggacgcc
aagctgtacgtcccggtcgccaacctgcacctgattgcccgctacaccggcagcgacgat
gaaatggcgccgctgcaccgcctgggttcggaaacctggcagaaggccaaacgcaaggcc
gccgagcaggtccgcgatgtggctgcagaattgctcgacatctatgcacgtcgggcagcc
cgcgaaggctatgcgtttgccgacccgaaagccgattacgcgaccttcagcgccggcttc
ccgttcgaagaaaccccggatcagcagaccaccatcgacgccgtgcgcgccgacatgctg
gcgcccaagccaatggacaggctggtctgcggcgacgtgggcttcggcaagaccgaagtg
gccatgcgcgcggcattcattgccgtgcatggcgggcggcaggtagcgattctggtgccg
accaccctgctcgcccagcagcattacaacagcttccgcgaccgctttgccgactggccg
gtgaccgtggaagtgatgagtcgcttcaaatcagccaaggaagtcagcgccgccgtcgcc
aatctggccgagggcaagatcgacatcgtcatcggcacgcacaagctgttgcaggatgac
gtgaagatcaagaacctcggtctggtgatcatcgacgaagaacaccgtttcggcgtacgc
cagaaagaacagctcaaggcgctgcgcagcgaagtcgatattctgaccctgaccgccacg
ccgattccgcgcaccctgaacatggccgtgtcgggcatgcgtgatctgtcgatcatcgcc
acaccgccggcgcgcaggctgtcggtgcgcacgttcgtcatggagcagaacaagccgacg
atcaaggaagccctgctgcgcgagctgttgcgcggcggacaggtctattacctgcacaac
gacgtcaagaccatcgaaaaatgcgcgtcggaactggcagaactggtgccggaagcgcgt
atcggcatcggccacggccagatgcgcgagcgcgatctcgaacaggtgatgagcgacttc
tatcacaagcgtttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtg
ccgagcgccaacaccatcatcatcgagcgcgccgacaagttcggtctggcgcaattgcac
cagttgcgcggtcgagtcgggcgcagtcaccaccaggcctatgcctacctgctgacgccg
ccccgcaaacagatcaccccggacgccgaaaagcgtctggaagcaattgccaacacccag
gacctcggcgcgggcttcgtgcttgcgaccaacgacctggaaatccgtggcgcaggtgaa
ctgctcggcgatggccagagcggccagatccaggccgtgggtttcacgctgtacatggaa
atgctcgaacgcgcggtcaaggcgatccgcaagggagaacagcccaaccttgatcagcca
ctgggtggcgggcctgaaatcaacctgcgcgtgccagcgctgattccggaagcctacctg
ccggacgtacacacccgcctgattctctacaagcgcattgccaatgcggcggatgaagat
gcactgaaggaccttcaagtcgaaatgatcgaccgtttcggtctgctgccggagccgacc
aagaacctggtgcgaatcaccttgctcaagctgcaagcagaacaactgggcatcaagaaa
gtcgacggcgggccgcaaggtggacgcatcgagtttgccacggagaccccggttgatccg
ttgaccctgatcaaactgatccagagccagcccaaccgctacaaattcgaaggtgccacg
ctgttcaaattcatggtgcccatggaacgcccggaagagcgtttcaacaccatcgaagcg
ctgtttgagcgcctgaccccgaaaactgcctga
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