Pseudomonas syringae CC1557: N018_18420
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Entry
N018_18420 CDS
T03014
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psyr
Pseudomonas syringae CC1557
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psyr03016
]
N018_18420
Enzymes [BR:
psyr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
N018_18420
Transfer RNA biogenesis [BR:
psyr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
N018_18420
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AHG42081
UniProt:
W0MZ20
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All DBs
Position
complement(4095036..4096169)
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AA seq
377 aa
AA seq
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MAIDIHWIRDDDSLALHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGKSAWLIDPL
LINDWRPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQEVLDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRLSDDKYAWL
LDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREARARNLPRNRIV
REHSLWPLARTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTASSLPPEEWPPALPEPL
PVDAAGSIKRLRAIGQQYAEKMDMAPELMLRKKTLEALLKSGYPDGPYQLPDSLRGWRRE
LMGQALLDSLATPGEQS
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacgacgacagcctcgccctgcattgcgcacaa
tggcagtcactgccttttgtcgcgctcgacaccgagttcatgcgggtcgacaccttctac
ccgatagccgcgctgctgcagattggcgacggtaaaagcgcctggctgattgatccgctg
ctgatcaacgactggcgaccactgtctgcgttgcttgaaaaccccgacgtcatcaaagtg
gttcatgcgtgtagcgaagacctcgaagtcctgctgcgcctgaccggcagcttgccggtt
ccgctgtttgatacgcaattggcagccgcttacctgaacctcgggttttccatgggctat
tcacgcctcgtgcaggaggtgctcgacatcgatctgcccaagggcgagacccgttccgac
tggctgcaacgcccgttgtcggagacgcagatcagctacgcggccgaagatgccgtacac
cttgccgagctgttcgccatcctgcggccgcgcctgtccgacgacaaatacgcctggctg
ctggacgacggtgcggagctggttgccaacctgcgccgtgaagttgacccgtacgaggtc
taccgcgacgccaaactggcctggaagctgtcccgcgcgcagttggcggtactgcgcgag
ctgtgcgcctggcgcgagcgcgaggcccgtgcccgcaacctgccgcgtaatcgcatcgtg
cgtgaacattcgctctggccgctggccaggacccagccggataacctcggtgcgctggcc
cggatcgaagacatgcacccgcgaaccgtgcgtcatgacggcgagttcctgctggagctg
atcaagacggcgagcagcctgccgccggaagagtggccgcctgcgctgcccgagccgctt
ccggtcgacgccgccggttcaatcaaacgcctgcgtgcgatcggccagcaatacgccgag
aaaatggatatggcgcccgagctgatgctgcgcaagaagaccctcgaagccttgctaaag
agcggctaccccgacggtccttatcaattacccgattcgttgcgtggctggcgtcgcgaa
ttgatgggtcaggcgctgctcgacagcctggccacccccggagaacagtcttga
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