Pseudomonas syringae CC1557: N018_18915
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Entry
N018_18915 CDS
T03014
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psyr
Pseudomonas syringae CC1557
Pathway
psyr03030
DNA replication
psyr03430
Mismatch repair
psyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N018_18915 (dnaE)
03430 Mismatch repair
N018_18915 (dnaE)
03440 Homologous recombination
N018_18915 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyr03032
]
N018_18915 (dnaE)
03400 DNA repair and recombination proteins [BR:
psyr03400
]
N018_18915 (dnaE)
Enzymes [BR:
psyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
N018_18915 (dnaE)
DNA replication proteins [BR:
psyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
N018_18915 (dnaE)
DNA repair and recombination proteins [BR:
psyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
N018_18915 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AHG42168
UniProt:
W0MYR3
LinkDB
All DBs
Position
complement(4190615..4194136)
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG
IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV
AQASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRTNDEEH
LHAAVALAQRHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHNYSDQQYLK
SPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEEPLDIAFIPLDDMPTYQ
LLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNISEFKFTVSDDGRILYGLGAI
KGVGEGPVEAITDARQSGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALDRLGPYFELEP
KAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADADVYANHRKTRE
LSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGLIIALRVM
KNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
AKRVMSIEDARTNLAESLRVTVHADALKGDRLRWLGDLCKRHRGACPITVDYTGQDARAL
LQLGEAWRIDPADSLIQALRDQFGRENVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttctttcgttcatctacgcctgcacaccgaatattcgctggttgacggtctg
gtccgggtcaaaccgttgatcaaggcgctgaccggcatgaacatgcccgccgtggcggtg
accgatcagaacaacatgtgttcgctggtcaagttctacaaggccgcgcagggctcgggc
atcaagccgatctgtggtgtcgatctgtggctggcgggccgggacgaagatgccgcgctc
agccgcataagcctgttggcgatgaacgcccagggctatcgcaatctgaccgagctgatc
tcgcgcggcttcatcgaaggccagcgcaacggtcagatcgtcatccagcgccagtgggtt
gcgcaggccagcgaaggcgtgattgcgctttctgcggccaaggaaggcgagatcggcatg
gcgctgctaggcggtaatcccggcgaggcggacgaactgttgcgcgagtggctggaagtc
tttcctgaccgcttctatatcgaagttcagcgcaccaatcgcaccaatgacgaagagcat
ctgcacgccgctgtagcccttgcccagcgccacggtgcgccgctggtggcgaccaacgat
gtgcgcttcatcaagcaggccgacttcgaggcccatgagacccgtgtgtgcatcggcgaa
ggccgtgcgctggacgacccgcgtcgctcgcacaactacagcgatcagcaatacctgaaa
agcccggaagaaatggccgagctgttcagcgacctgccggaagccctcgaaaacaccgtc
gagattgccaaacgctgcaacatcgacgtcaagctgggcactcacttcctgcccaacttc
ccgattcccgatggcatgaccatcgacgagtatttccgcaaagtctcgttcgacggcctt
gaagagcgtctttctgtcctgttgccaaaggacacgaccgaagattacgaggccaaacgt
caggtctacgtcgaccggctgaatttcgagctggatatcattatccagatgggcttcccc
ggctatttcctgatcgtgatggacttcatccagtgggccaagagcaacggtgtgccggtg
gggccgggccgtggttcgggtgccggttcactggttgcctatgtgcagaagatcaccgac
cttgatccgctggaatacgacctgctgttcgaacgcttcctgaaccccgagcgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggccgcgatcgggtcatcgagtatgtg
gccgagaaatacgggcgcaacgcggtcagccagatcattacctttggttccatggctgcc
aaggctgtggttcgcgacgtggcgcgggtgcagggcaagtcctacggcctggcggatcgt
ctgtcgaagatgatcccgttcgaagtcggcatgaccctcgaaaaagcctacgagcaggaa
gaaatcctccgtgacttcctcaaggtcgacgaggaagctgcggaaatctgggagatggcg
ctcaagctggaaggcattgtgcgtaacgtcggcaagcacgccggtggtgtggtcatcgcc
ccgaccaagctgacggacttctcgccgatctattgcgacgaggccggtgacggtctggtg
acccagttcgacaaggacgatgtcgaggcggccgggctggtgaagttcgacttcctcggc
ctgcgtaccctgaccatcatcgactgggcgctcaagaccatcaaccgcgagcgcgccaag
gtcgacgaagagccgttggacatcgcgttcattccgctcgacgacatgccgacctatcag
ctgttgcagcgggccgaaaccacggcggtgttccagcttgagtcgcgcggcatgaaagag
ctgatcaaaaagctcaagcccgactgtctggaagacttgatcgcactggtggcgctgttc
cgtcccggccctctgcaatcgggcatggtggatgacttcatcaaccgtaagcacgggcgc
gccgagctgtcctacccgcatgtcgattaccagtacgaaggcctgaagccggtgctggca
ccgacttacggcatcattctgtatcaggaacaggtgatgcagatcgcccaggtcatggcc
ggttacacccttggcggtgcggacatgctgcgtcgggcgatgggcaagaagaagcctgag
gaaatggccaagcagcgcggcggtttcatcgacggttgcaagaccaataatatcgacccg
gaccttgccggtaacattttcgacctggtggagaaattcgccggttacggcttcaacaaa
tctcactcggcggcttatggactggtgtcttaccagaccgcctggctgaagacgcactat
ccggcgccgttcatggctgccgtgctgtcggcggacatgcacaacaccgacaaggtcgtg
accttgatcgaagaagtgcgcaccatgaaactgcgcctcgacgcgccggacgtgaacatc
tccgagttcaagttcacggtcagcgacgacggccgcattctttacggtcttggtgcgatc
aagggcgtgggcgaggggcccgtcgaggccatcaccgacgcgcgccagagtgggccgttc
aaggacctgttcgatttctgtgcccgggtcgacctcaagcgagtcaacaagcgaaccctg
gacggtctgattcgcagtggtgcgctggatcgtctcggtccgtacttcgaactggaaccc
aaggcgtatcaggccaatatcgaccgtaaccgttcggtattgctcgcggcgctggaagag
gccattcaggctgccgagcagacggcgcgcagtcgcgacagtggtcactcggacctgttc
ggcggcctgttcgtcgaagcggatgccgacgtttatgccaatcatcgcaagacccgtgag
ctgagcctcaaggatcgcctgcgtggcgagaaggaaaccctggggctgtacctgaccggg
cacccgattgacgagtacgaaggcgaaatccgccgctttgcccgtcagcggatcattgac
ctcaaaccggccagagacacgcagacggtggccggcctgatcatcgccctgcgcgtgatg
aagaacaagaagggcgacaagatggggttcattaccctggacgaccgctcggcacgtatc
gaagcatcgctgtttgccgaggcgtttcattcggcccagtcgttgctgcagaccgatgct
atggttgtggtcgaaggtgaagtgagcaacgatgacttctccggcgggctgcgactgcgc
gccaaacgtgtcatgagtatcgaggatgcgcgtaccaatctggccgaaagcctgcgtgtg
acggtgcatgccgacgcactcaagggtgaccggctgcgctggctgggtgatctgtgcaag
cgccatcgcggtgcctgcccgatcacggtggactacacggggcaggacgccagagcattg
ctgcaattgggagaagcctggcgtattgatcctgcagacagcttgattcaagctctgcgt
gaccagttcgggcgtgagaacgtctttctccagtatcgttga
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