Pseudomonas syringae CC1557: N018_20305
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Entry
N018_20305 CDS
T03014
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psyr
Pseudomonas syringae CC1557
Pathway
psyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N018_20305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyr03019
]
N018_20305
Enzymes [BR:
psyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N018_20305
Messenger RNA biogenesis [BR:
psyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N018_20305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AHG42439
UniProt:
W0MV54
LinkDB
All DBs
Position
4498236..4499696
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AA seq
486 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQRAPIPTASIPASPSPVTGDQPDHAAQTQALDTVSEPSKARAP
RTDKPRAERPRRERVAKPPAPQWKLEDFAVEPQEGKTRFHDFNLAPELMHAIQDLGFPYC
TPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAP
TRELVVQIAKDAADLTKYTDLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQR
GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQ
WTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRR
IEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINF
TLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTHLLRP
VVRHTT
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcacttaaaaagatgttcggtaagagcgaggctgagcaacgcgcg
cctataccgacagcctccatccctgcttccccttcgcccgtcacaggcgaccaaccggat
catgctgcccagactcaggctctggacaccgtcagcgagccctccaaagccagagcgccg
cgtaccgacaaaccacgggccgaacgcccgcgccgcgaacgtgtggccaaaccgcccgcg
ccgcaatggaagctcgaggatttcgccgtcgagccgcaggaaggcaagacccgcttccac
gacttcaaccttgcacccgaactgatgcatgcgattcaggatctgggtttcccgtactgc
acgcccatccaggcgggtgtgctgggtttcaccctcaagggcaaggatgcaatcggccgc
gcacagacgggcaccggcaagactgctgcctttctgatctcgatcatcgagcagttgacc
caaacgccaccaccggcagaacgctacatgggtgagccgcgcgcactgatcatcgcgcca
acccgtgagctggtggtgcagatcgccaaggatgccgccgacctgaccaagtacaccgac
ctgaacgtcatgacgttcgtcggcggcatggacttcgacaagcagctcaagcagcttgaa
gcccgccattgcgacatcctggtcgccacgccaggccgcttgctggacttcaaccagcgc
ggcgaagtgcatctggacatggtcgaagtgatggtgctcgacgaagccgaccgcatgctg
gacatgggtttcatcccgcaggtccggcagatcattcgccagacaccgcacaagggcgaa
cgccagaccctgctgttctccgcgaccttcaccgaagacgtgatgaacctcgccaaacag
tggaccactgatccctccatcgtcgagatcgagtcgctgaacgtggccagcgataacgtc
gaacagcatatctatgccgtcgccggtgccgacaaatacaagctgctgtacaacctggtg
accgacaacggctgggaacgggtcatggtctttgccaaccgcaaggacgaagttcgccgt
atcgaagaacgtctggtacgcgacggcgtcaacgctgcgcagttgtcgggcgacgtacct
cagcacaaacgcatcaagactctggaaggcttccgcgaaggcaagattcgtgtactggtt
gccaccgatgtggcgggtcgcggcattcacattgatggcatcagccacgtgatcaacttc
accctgccagaagtaccggacgactacgtgcaccgtatcgggcgtaccggtcgtgcaggc
gccgacggcgtgtccatcagctttgccggcgaggacgattcgtatcagttgcccgccatc
gaagagaagctgggccgcaagatcagttgcgagacaccgccgactcatttgctgagaccc
gtggtgcgacacaccacctga
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