Promethearchaeum syntrophicum: DSAG12_00509
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Entry
DSAG12_00509 CDS
T06555
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psyt
Promethearchaeum syntrophicum
Brite
KEGG Orthology (KO) [BR:
psyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psyt03016
]
DSAG12_00509
Enzymes [BR:
psyt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DSAG12_00509
Transfer RNA biogenesis [BR:
psyt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DSAG12_00509
Prokaryotic type
tRNA splicing ligases
DSAG12_00509
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
HAD_Pex22
Motif
Other DBs
NCBI-ProteinID:
QEE14695
UniProt:
A0A5B9D6Q8
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All DBs
Position
4312928..4314394
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AA seq
488 aa
AA seq
DB search
MITQRVDENIYEVPADMKLIKVEDKILNFNMKVPARIYANEYLMERISKDKSIDQITNVA
CLPGIRKHVIAMSDAHQGYGFCIGGVAATDIEGGAISPGGVGYDINCGVRLLKTGLEYSE
VSAQLPELTEGLFHNIPSGLGSKGKLHITPTDLNQVLDEGINWAIEKGFGYDKDREFCED
HGFTQGADSSLVSKRAKDRGIRQLGSLGSGNHFIEIQRVEEIFDDRAAKIMGIQKNQVTM
MIHTGSRAMGHQVCTDSLQEIDHLMHRNGIIAPDRELGYAISGTKEADRYLAQMRAAANF
AWTNRHIIMHWARETFQSVLGLEPSQMELIYGLAHNILKQEEHDLGNGMRGMVNVHRKGA
TRAFPPGHPDVPDKYKEIGQPVLIPGSMGTSSYLCVGQEKAMDLSFASTAHGGGREMSRS
KAKRQFWGKTIKQELGKQGIVVRAASLKILAEEAPLAYKNIDEVVGVSHNLGIIKKVAKL
IPIGVTKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgataacgcaacgagtagatgagaatatctacgaagttccagcagatatgaaattaatt
aaagttgaagataaaatcctaaattttaacatgaaagtgccagcgcgaatctatgctaat
gaatatttgatggaaagaattagtaaagataaaagtattgatcaaattacaaatgttgca
tgtttacctggaattagaaaacatgtaattgcgatgagcgatgctcaccaaggatatgga
ttctgtataggaggagttgctgccacggatattgaaggaggagcaatatcccctggagga
gttggttatgatattaattgtggcgtgaggttattaaaaacaggtttagagtacagtgag
gtttcagcccaattaccagaattaacagaaggattgtttcacaatataccaagtggttta
ggttctaagggaaaacttcatataacacctactgatttaaatcaggttttggatgaagga
attaattgggcgatagaaaaaggattcgggtatgataaagatcgtgaattttgtgaagat
catggttttactcaaggagctgacagttctttagtttcaaaaagagcaaaggatagaggg
ataagacaactaggatctttaggttcaggaaatcatttcatcgaaattcaacgtgttgaa
gaaatattcgatgaccgggcagcaaaaataatgggaatccaaaaaaatcaagttaccatg
atgattcatactggaagtcgtgcaatgggtcatcaagtatgtactgattctttgcaggaa
atcgatcatttaatgcatcgaaatgggattattgcaccagatcgagagttgggttatgcc
ataagtggaactaaagaagcagatcgatatttagctcaaatgcgggcagcagctaacttt
gcttggactaatcggcatatcatcatgcactgggccagagaaacttttcaatcggtctta
gggcttgaaccttcacaaatggaattaatttatggattagcacataatattcttaaacaa
gaagaacatgatcttggtaatggaatgcgtggaatggtgaatgttcatagaaaaggcgca
acccgagcattccctcctggtcatcccgatgtccctgataagtataaagaaatcggtcaa
cccgtgctaatacctggaagcatggggacgtcatcatatttatgtgttggccaagagaaa
gcaatggatttgagttttgctagcacagcgcatggaggaggtagagaaatgagtcgttca
aaagcaaaacgtcaattttggggtaaaaccattaaacaagaattaggaaaacaagggatt
gtagttcgagcagcctccctcaaaattttagcagaagaagctcctttagcctataaaaat
atagatgaagtagtgggagtttcacataatttagggattattaagaaagttgcgaagtta
attccgataggtgtaacaaaaggataa
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