Promethearchaeum syntrophicum: DSAG12_00987
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Entry
DSAG12_00987 CDS
T06555
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psyt
Promethearchaeum syntrophicum
Pathway
psyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSAG12_00987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyt03019
]
DSAG12_00987
03009 Ribosome biogenesis [BR:
psyt03009
]
DSAG12_00987
Enzymes [BR:
psyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSAG12_00987
Messenger RNA biogenesis [BR:
psyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSAG12_00987
Ribosome biogenesis [BR:
psyt03009
]
Prokaryotic type
rRNA helicases
DSAG12_00987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QEE15163
UniProt:
A0A5B9D7Y7
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All DBs
Position
complement(489453..490772)
Genome browser
AA seq
439 aa
AA seq
DB search
MNFQDMNLKQAIFQGLEEMEIFNPTPIQKQTIPQALDNPKSHIMAQARTGSGKTLAFAIP
IAQNIDNNQKKIQAIILVPTRELCKQVAEVFVSLTQFSKLNIVQVYGGVSIERQIRTIQD
GSQIVVATPGRLIDLYNRNRINFREVKFVVLDEADRMLDMGFMPDIEFLLLQAMKNLTPR
MMLFSATMLEQVKSLAKRFTHGKNIIEIDVSKDSLTVGNCHQFYYMFDDKRDKYYHFIRI
IRKEHPKHCMIFVNTKRTGDWLFGRIIDEKNLNLKPELISGNLTQRKREVVLDKFRKRKI
NCLIATDVAARGLDIEKVSHVFNYDLPEFEENYVHRIGRTARVTGTSGKVEKGTAISLVQ
SDQYRTLTRIEGFMNKEIEKRPLPKRQGNENWNRGSNKQSSQKQGYRRTDQKSQPRRSSY
NPNKNKSKKDHSDRRNFLY
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgaattttcaagatatgaatttaaaacaagcgatttttcaaggattggaggaaatggag
atttttaatccaaccccaatccaaaaacaaacaattccacaagcgttagacaatccaaag
agccatatcatggctcaagcaagaacgggttcaggaaaaacattagcatttgcaattcca
atagcgcaaaatatagataataatcaaaaaaaaatacaagcaattattctagttccaacg
cgagaattatgtaaacaggttgcagaagttttcgtttctctgacacaattttcaaagtta
aatattgtccaagtatatggtggagtctctatagaacgacaaataagaacgatccaagac
ggttcacaaatcgtcgtagcaacaccggggcgtttaattgatttatacaatcgtaataga
attaattttcgagaagtgaaattcgtagttttagacgaagcagatcggatgttagatatg
ggctttatgcctgacattgaatttcttcttttacaagcgatgaaaaatttaactccaagg
atgatgcttttttcagcaaccatgttagagcaggtaaaatctctagctaagcggtttact
catggaaaaaacattattgaaatcgatgtttccaaggattccttaacggtgggaaattgc
catcaattttattacatgtttgatgataaacgcgataaatattaccatttcatcagaata
attcgaaaggaacacccaaaacattgtatgatattcgtgaacacaaaaagaactggagat
tggctttttggtagaataattgacgagaaaaaccttaatttgaaaccagaactcatatca
ggaaatctaactcaacgaaaaagagaagtagtattagacaaattcagaaaaaggaaaata
aattgtttgatagctactgatgtcgccgctcgcggtcttgatattgaaaaagtcagccat
gtctttaattatgacctgcctgaattcgaagaaaactatgttcacagaattggacgaact
gcgcgagttactggaacttcaggaaaagtcgagaaaggtactgctatttcattggttcaa
tcagatcaatatagaacgttaacacgaattgaaggattcatgaataaggaaattgaaaaa
agaccactacctaaaagacaaggaaatgaaaattggaatagaggatcaaataaacaaagt
tctcaaaagcaaggatatagaagaacagatcaaaaatctcaacctagaagatcgagttat
aatccaaataaaaataaatcaaagaaagatcactcggatcgtcggaattttctatattaa
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