Psychrobacter sp. YP14: DLE54_01790
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Entry
DLE54_01790 CDS
T05488
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy02020
Two-component system
psyy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DLE54_01790 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DLE54_01790 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyy03021
]
DLE54_01790 (rpoN)
Transcription machinery [BR:
psyy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DLE54_01790 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Ferritin
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AWT48388
LinkDB
All DBs
Position
423096..424841
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AA seq
581 aa
AA seq
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MISTSFNLGFNLSTTQKLTPQMQQAIKLLQLSSLELEQEVQMKLDSNPLLERVEDDDIDA
EDFNSIEELTRLELDAEAQKEVYDPYNDDYGLEYQEGATEDVFSELDGDGLGNLGDLNDL
NDLNENALDDTNKAEGDIEQNQALISITTTADNDLKAEASNLDTSLGELPIDTEWDDIYT
HSPTGLAAPDTQGMSDYQGATSVSLQDHIRWQLTFSKLSSVQSLIADYLIDALDDHGFIQ
IDMAELKDSFDEMASFYQWQQKIELEHIQQVIELIQSCEPLGVGARNLAESLQIQLRALD
ENTPYMRQALRLLDEHQLLVSNNIKELMSRTGLKNNEISPALELIRTLNAAPGLAFSKAQ
PDYGSTPEVYDIPDVIVQLVHNQGGSEAVWKVELNPETLPKLRINQQYASLVKRGDDSPD
NVYLRDNLMDARLFIRSIEERNHNLLKVATCIIKMQQDFLLQGATAMKPLILKEVAEEVG
LHESTVSRLTTSKSILTPQGLFSLKHFFSSHVSSDQGDVSSTAISAMIEALIDAEDPKKP
LSDSAIKQHLQQQGIDIARRTVAKYREAMNIGSSTQRKLKF
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgataagcacttcctttaatttaggctttaatctatccaccacccaaaagctgacacct
cagatgcagcaagccattaagctgttgcagttatcaagccttgagcttgagcaagaggtg
cagatgaagcttgatagcaatcctttattagagcgggtagaggatgatgatattgatgct
gaggattttaacagtattgaggagctgactcggttggagcttgatgccgaagcacaaaag
gaggtgtatgacccttataatgacgactatggcttagagtatcaggaaggggcgactgag
gatgtatttagcgagttagatggcgatggcttaggtaatttaggtgacttaaatgactta
aacgacttaaacgagaacgcgctggatgacacaaataaagcggagggggatatagagcaa
aaccaagctttaatcagtatcaccaccacagcagataacgatcttaaggctgaagcatca
aacctagacaccagtctcggtgagctgccgatagacactgagtgggatgatatctatacc
catagccccactggacttgccgcaccagacacccaaggcatgagcgattatcaaggtgca
acctccgtcagtttgcaagaccacattcgctggcagctcacttttagtaagctgtcctca
gtgcagtcgcttatcgctgattatttgattgatgctttggatgatcacggttttattcaa
atagacatggctgagctaaaagacagctttgatgaaatggccagcttctatcagtggcag
caaaaaattgagttagaacatatccaacaggtcatcgagctgattcaaagctgtgagcca
ttgggagtgggggcgcgcaatttggccgaatcattacaaattcagctgcgtgcactggat
gagaataccccttatatgcgtcaagcgctgcgtctgctagatgagcatcaactgcttgtg
agtaacaatattaaagaattgatgagtcgcacgggtctaaaaaacaatgaaatcagcccc
gcactcgaattgattcgtaccctgaatgccgcgccaggattggctttttctaaagcgcag
ccagactatggcagcactcctgaggtgtatgatatccctgatgtgattgtacaactggtg
cataaccaaggcggcagtgaggcggtgtggaaggtcgagctgaatccagagaccctgcct
aagctaagaatcaatcagcaatatgcaagcttggttaagcgcggggatgacagcccagac
aacgtgtatctgcgtgataatctaatggatgcccgcttatttatccgaagcatcgaagag
cgcaatcacaacctacttaaagtggccacctgcattataaaaatgcagcaagatttttta
ttacaaggtgccactgccatgaagccattgattttaaaggaagtcgctgaagaggtaggt
ctgcatgagtctaccgtatcacggttgaccaccagtaaaagcattttaaccccgcaaggg
ctgttctccctcaagcactttttctcctcccacgtctcaagtgatcaaggtgacgtctcc
tccacagccattagtgccatgattgaggcattaattgacgctgaagaccccaaaaagccg
ttgtcggacagtgccattaagcagcatttacagcagcaaggtatagatattgctcggcgc
acagtggccaaatatcgagaagccatgaatattggctcttctacacagcgcaagttaaag
ttctag
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