Psychrobacter sp. YP14: DLE54_02460
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Entry
DLE54_02460 CDS
T05488
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLE54_02460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyy03019
]
DLE54_02460
03009 Ribosome biogenesis [BR:
psyy03009
]
DLE54_02460
Enzymes [BR:
psyy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DLE54_02460
Messenger RNA biogenesis [BR:
psyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DLE54_02460
Ribosome biogenesis [BR:
psyy03009
]
Prokaryotic type
rRNA processing factors
DLE54_02460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AWT48507
LinkDB
All DBs
Position
complement(566619..570725)
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AA seq
1368 aa
AA seq
DB search
MKRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEY
GSKRQGFLPVREIASEYLSGNPREENIRKLIKEGDELIVQVEKEERGNKGAALSTYVSLA
GRYLVLMPNNPKGGGISRQISGKLREDMKRMLGNLDLPKGMSVIVRTAGIGKTQEDLQHD
LNHLLNIWNAIQDQNKKYASPRLVHQEAGVVTRAVRDYLRDDITEIWIDNEEAFIEAETF
IKAVMPTQIDKLRKYTDFEPMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEALVSIDI
NSAKSTKGADVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDSKHQKEVEKRLV
EATKYDRARVQFGEISRFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIM
RQIEQTALKERHGEVQAEVPTDIAAFLLNEKRESLVYLEQDSGTRITILPHAHLESPNFN
IHFNHHGFAPASYERVTDTQQQETSGLGYEVDWQTAESERPEQQPVRQPRKTAPQASADT
SKPAEAAKAAAPVANTAAKPQQPAEAQVEQAKPAAVAWLSNLFAPTPQAQMSATVSSADA
AQAIEAIVNTGAQSRGAFGQVSAAPAAAPVASATVAAKPASAPTASEQANSADDTEADND
KDRRRSRNNRSRNKYDKRSKPDNRRRSQDKEDKKSADTADKSDNRQVAEQEPNKELPKRE
PNSKRESRGAIERGDTKQPNKASSDNRSDRNQKTDEKSRSADKNGSRSNSERPVDPNEVN
LRVTEAQNTLKKSEVVHICLDDAKSSQKSAQTQSKPEAQQASPNNRAVTRQQSTQAEPQA
DNSKAAKSEASRDHKPSDDASAAQPNTAAVTEVAEPASNMKDGAAQGDQKQKADTKTESV
VAPSVSKDAEPKADQPAKVQASTAQSEPAEAVIDTEATPAKATAINAAYAARSPEEATAQ
PVVASEDQAPETASLSFDAKELFANRYVAAQKYGQASNDPRVIKASLEAQAQSFAAPEAD
EPELLAPVATITGSVGQFIHTHLAQPRMRLAKDGVIACFLAALNAHKQTSGSTTKPAAKR
KAAANNSKQHAKAFSFVNYGYQSLSPSYLERFAQMTSAVATHTIEQGKTEVKPSPIGARA
SNDPRGQHPDYTAPDAASDAVTQPLDNGLTAGDVSDTVEATPAQAEAAPQEVKDLAQLLT
LNVGHFIREMLGQEGVDSIAAGHTEAAFLKALRQPLPVAQSAQSANDTLLEDTDSSAEAT
VQQVADEAHVTETIEQPATALVNEPQADAISDDSTEMLQAAHHAANTSNKTSIETYKSMI
ENISEQLLPQTGLLNLTSPKVPKARSRKVKEDAKKTTATPKGSTDSDS
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatactgattaacgccacccacaacgaagaagttcgtgtcgccttatgtaaa
ggcaaccatttatacgacttcgatcttgaaaaccgcacccgcgaacagaaaaaagccaac
atctataaaggccatgtcacccgcgtagagccgtcattagaagccgtatttgtcgaatat
ggctcaaagcgtcagggcttcttgccagtgcgcgaaattgccagcgaatatctgtcaggc
aaccctcgtgaagaaaacatccgcaagcttatcaaagaaggcgatgagcttatcgtgcaa
gtcgaaaaagaagagcgtggtaacaaaggcgccgccctatctacttatgtgtctttggcc
ggccgctatttggtattaatgccaaacaacccgaaaggcggcggtatctcacgtcaaatc
tcaggcaagctgcgtgaagacatgaagcgtatgctgggtaatttagatttgccaaaaggg
atgagcgttatcgtacgtactgctggtatcggcaaaacccaagaagatttgcaacacgat
ttaaatcacctgcttaatatctggaacgccattcaagatcaaaacaaaaaatacgcctct
cctcgtcttgtacatcaagaagcgggggtggtgactcgtgcggtacgcgattatctacgt
gatgacatcactgagatctggattgataatgaagaggcattcattgaggctgagaccttt
ataaaagcagttatgccgactcaaattgataagctacgcaagtacactgactttgagcct
atgttctcaagcttcaacgttgagcgccaaattgaaaccgcttatcagcgtgaagtacgt
ttgccctctggtggctcaattgttattgaccaaaccgaagccttggtctctatcgatatc
aactcagccaaatcgaccaaaggtgcggacgtcgctgagacagcctatcacaccaactta
gaggcagccgatgagattgcccgtcagctgcgtctgcgtgatatgggcggcctaattgtt
atcgacttcattgatatgaacgacagcaaacatcaaaaagaagtggaaaaacgtctggtt
gaagccaccaaatatgaccgtgctcgtgttcagtttggggagatttcacgctttggtctg
atggaaatgagccgtcagcgcctacgtccttctttagaagagtccaccggctatatctgc
cctcgctgtcatggcaacggtatgattcgtgatttacgttcgttatcactgtctatcatg
cgtcaaattgaacaaacagccttaaaagagcgtcatggtgaggtgcaagctgaagtacct
acggatatagcagcatttttattaaatgaaaagcgtgaaagcttggtgtaccttgagcaa
gacagcggcacccgcattactatcttgccacatgcccaccttgagtcgccaaacttcaat
atccactttaaccaccatggcttcgcacccgcaagctatgagcgtgtgaccgatactcag
cagcaagaaaccagtggcctaggctatgaagtggactggcaaactgcggaatctgagcgt
ccagagcagcagcctgtgcgtcagccgcgcaaaacggcacctcaagccagcgccgatacc
agcaagcctgccgaggccgctaaagccgctgctcctgtggccaataccgctgccaaacca
cagcagcctgccgaggcccaagtagaacaggccaaacctgctgccgtggcttggctatca
aacctatttgccccaacaccgcaagcccagatgtcagccacagtaagcagtgctgatgcc
gctcaagcgattgaagccatcgttaataccggtgcgcaaagccgaggcgcttttggtcaa
gtaagcgccgcgccagccgctgcccctgtggcttccgctactgtagcggccaaacctgcc
tctgcccctaccgctagcgagcaagccaatagcgcagatgacactgaagccgataatgac
aaagaccgtcgccgcagccgcaacaaccgcagccgtaataaatatgacaagcgtagcaag
cctgacaaccgtcgccgcagccaagacaaagaagacaagaagtcggctgatacagcagac
aagtcagacaaccgtcaggtagctgagcaagagcctaacaaagagctgcctaagcgtgag
cctaatagcaaacgtgaatcacgtggtgctatagagcgcggtgacaccaaacagcctaac
aaggccagctcagacaaccgctctgatcgtaatcaaaaaacagacgaaaagtcacgcagc
gccgataaaaatggcagccgctcaaactctgagcgtccggttgaccctaatgaggtgaac
ctaagagtgactgaagcacagaacactttgaaaaaatccgaagtagtgcatatctgttta
gatgatgctaaatcaagccaaaaatctgcacagactcaaagtaagcctgaagcgcagcaa
gcgagccctaacaatcgcgccgtaactcgccagcaaagcactcaagccgagcctcaagct
gacaactcaaaggcagctaagtctgaagcttcgcgtgaccataagccaagcgatgatgca
tctgcagctcagcctaacacggcagctgtcacagaggtggccgaaccagcttctaatatg
aaagatggtgctgctcaaggcgatcaaaagcaaaaagccgataccaagactgagtcagtc
gtggcaccctcagtaagcaaagatgctgagcccaaagcggaccagccggctaaggtgcaa
gccagcacagcccagtctgaaccagctgaagcggtgattgatactgaagcgactccagcc
aaagccaccgctattaacgctgcttacgctgcaagatccccagaggaggcaactgcacag
cctgttgtagcctcagaagatcaggcccctgagacggcaagcttaagctttgatgccaaa
gagctgtttgccaaccgctacgtggcggcgcaaaaatatggtcaagccagcaatgacccg
cgtgtgatcaaagcctctcttgaagctcaagctcagtcttttgcagcgcctgaagccgat
gagccagagctcttagcaccagtggctacgattacaggctctgtgggtcaatttatccac
actcacctagcccagccacgtatgcgcttggctaaagatggggtaattgcatgcttctta
gcggcattaaatgcgcacaagcagacgtcaggcagtacaaccaagcctgctgcgaagcgt
aaagccgctgctaataacagcaagcagcacgccaaggcctttagcttcgtaaattatggc
tatcagtccttatcacccagttatctagagcgctttgcccagatgacctcagcggtagcg
acccataccatcgagcaaggtaagactgaagttaagccaagcccaattggtgcgcgcgcc
tcaaatgacccacgtggccagcatccggactatactgcccccgatgctgcctctgacgca
gtgacacagcctttagacaatggcttaactgcgggcgatgttagcgatactgtggaggcg
acaccggctcaagcagaggcagcgccacaagaagttaaggatttagctcagctacttacg
ctaaatgtcggccactttatccgtgaaatgctcggtcaagagggcgtggacagcattgca
gcgggacacactgaagcagctttcttaaaagccttgcgtcagccgctgccagtagcccaa
tcggcccaaagcgctaatgatacgctcttagaggataccgactcaagcgctgaggcaaca
gtgcagcaagtagcggatgaggctcatgttactgaaaccatagagcagccggccacagcg
ttagtgaatgagccacaagccgatgccatcagtgatgacagcaccgagatgctacaagca
gcgcaccatgctgctaatacgtccaataaaaccagtattgagacttataagagcatgatt
gaaaacatctcagagcagctactgccgcaaacaggactgttaaatctaacctcgccaaaa
gtgcccaaagcacgctcgcgcaaggtaaaagaggatgccaaaaagaccacagccacccct
aaaggctccaccgatagtgacagctaa
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