Psychrobacter sp. YP14: DLE54_03860
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Entry
DLE54_03860 CDS
T05488
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLE54_03860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyy03019
]
DLE54_03860
Enzymes [BR:
psyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DLE54_03860
Messenger RNA biogenesis [BR:
psyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DLE54_03860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Ald_Xan_dh_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AWT48748
LinkDB
All DBs
Position
897481..898632
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AA seq
383 aa
AA seq
DB search
MDEFITFADLSLSDSILRSVNDLGFTELTGIQAQILPHTLAGQDAIGQAQTGTGKTATFL
ITIIEALLKRPFADDEMRYIGEPRALILAPTRELANQIYDDAIALTKHTSLHSVCVMGGI
DYDKQIAALDKSYTDILIATPGRLIDLIYKGHVFLDRIEAFVLDEADRMLDMGFIPDIKR
LMRYMPPNTDRQSLLFSATFNQDVMNLAYQWLMNPVFVEIEPEHKTSDLVEQHFYLLTEA
DKHQALTQILAQPETKKVIVFANRKDQVKRLYTKLSADHNVVMLSGDVDQAKRERYLDKF
KNGNAKVLVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQKGISISFVSE
DDAFNLPAIEAHLDRHLKLEQWG
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtttattacctttgctgatttgtccttaagtgacagtatcttacgctcagtc
aatgacttaggttttaccgagttgaccggtatccaagcgcagattttaccgcatacgtta
gctgggcaagatgccattggtcaggcacaaaccggaacaggtaagacagccactttttta
attactattattgaggcattactaaagcgcccatttgcagatgatgaaatgcgttatatt
ggcgagccaagagcgctgattttggcacccactcgagagttggccaatcagatctatgac
gatgccattgccttgactaaacacaccagcttacacagtgtgtgcgtgatgggtgggatt
gattatgataagcagattgccgcgctagataaaagctataccgatattttgattgccacc
cccgggcgcttgattgacttaatttacaaaggccatgtgtttttagatcgtattgaagcc
tttgtcttagatgaagccgatcgtatgctagatatgggttttattccagatattaagcgt
ttgatgcgttatatgccgcccaacaccgatcgtcaaagcctgctgttttcggccaccttt
aaccaagatgtgatgaatctagcgtatcaatggcttatgaatccggtgttcgtagagatt
gagcctgagcataagaccagtgatttggttgagcagcatttttatctgttgaccgaagcc
gataaacatcaagcattgacccagattttggcgcagcctgaaacaaaaaaggtgatcgta
tttgccaatcgcaaggatcaggtaaaacgcttatataccaagttaagcgcggatcacaat
gtggtgatgctttcaggtgatgtggatcaagccaagcgtgagcgttacttggataaattt
aaaaatggcaatgctaaggtacttgtggcgactgatgtggcgggacgtggcattcatgtt
gatgacatcagccatgtggtcaattacaccttaccggatcagcccgatgattatgtacat
cgcatcggccgtactgggcgggccggccaaaaaggcatcagtatcagctttgttagtgaa
gatgatgcctttaacctgccggccattgaagcgcatttagaccgccacttaaagcttgag
cagtggggctaa
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