Psychrobacter sp. YP14: DLE54_03960
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Entry
DLE54_03960 CDS
T05488
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy03410
Base excision repair
psyy03430
Mismatch repair
psyy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DLE54_03960 (recJ)
03430 Mismatch repair
DLE54_03960 (recJ)
03440 Homologous recombination
DLE54_03960 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyy03400
]
DLE54_03960 (recJ)
DNA repair and recombination proteins [BR:
psyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DLE54_03960 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DLE54_03960 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DLE54_03960 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AWT48767
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Position
919550..921376
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AA seq
608 aa
AA seq
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MLKLTPRFTGTLPDDLPACFTQMYQQTPTLTRLFLARGIQSDQDLDYGLSALLPAQGLSD
VDEAVTLMDEAIEAQRRILIVGDFDCDGATSTALMMRILSQMGAVVDFVVPDRFKYGYGL
TPEIVQLGIEQYQPDMIITVDNGISSHEGVDKAIANGIKVIITDHHLTTKSKPNAHAVVN
PNQLGCSFESKALVGVGVAFYLLGRLAKYRREAGRSTAQVSRYLDLVALGTIADVGVLDH
NNRILVNHGLAAIRAGRCSLGILALLELAGRDYQKMSVQDFGFVIGPRINAAGRMDNMRI
GIECLMADDMSDAKRLAFELDKLNKERRYVEGEMREQADEILGQLQPNSDRSQGQTTDEQ
SDDSLKQQAESFTDKAQPRSLILYQDNWHQGVIGIVAGRLKESHYRPAIVFAPADDTQLD
GQDAIKGSARSIPGIHIRDAIERIAESHPELITHFGGHAMAAGLTLKRKDFKAFAEAFEL
QMQSVEASVFEEQQFTDGQLLAEDFSLQFVEALTQNHIWGHGFVPPQFDGVFDVVQARIL
KDKHLKLSLKYPGVMYPIDAIWFNYDPKKWDYRAQQVHVLFELSINEWQGNQNIQLMVKD
VAVTQISP
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagttaacccccagatttaccggcaccttgcctgatgatttacctgcctgtttt
acccagatgtatcaacaaaccccgaccctgacgcgcctatttttggcacgtggcattcaa
agtgaccaagacttagactatgggttatctgcgctactgcccgcgcaaggtctgagcgat
gtcgatgaagcggtgacgctgatggatgaggccattgaggctcagcggcgtattttgatt
gttggtgattttgattgtgacggagcgaccagtacggcgctgatgatgcgcatcctgtca
cagatgggtgccgtcgtagattttgtggtgccggatcgttttaaatatggctatggcctg
acgcctgagatagtacagctgggtatagagcagtaccagccggatatgattattactgta
gataatggcatctcaagccatgagggggttgataaggccattgccaatggcattaaggta
attatcaccgatcatcacctcaccactaagagcaagcctaatgcccatgctgtggtgaat
cccaatcagctgggctgctcatttgagagtaaggccttggtgggcgtaggcgtggccttt
tatctgctcgggcgtctggccaagtaccgccgagaagcggggcgatcaacggcccaagtg
agccgttatttagacttagtggccttgggcaccatcgccgatgtgggcgtgcttgatcac
aacaaccgcatcttggtcaatcacggcttggctgcgataagagcagggcgctgctcgctg
ggtatattggcgctgcttgagctggcggggcgtgattaccaaaagatgagcgtacaagac
tttggcttcgtcattggccctcgtatcaatgcggcagggcgcatggacaatatgcgtatt
ggtattgaatgcttgatggccgatgacatgagtgacgccaagcgtttggcctttgagctt
gataagctgaacaaggagcgccgctatgttgagggcgagatgcgtgagcaggccgatgag
attttaggtcagctgcagccaaactcagaccgcagtcagggacagacgactgatgagcaa
agtgatgatagtttaaagcaacaagcagagtcttttactgataaggcacagccgcgcagt
ttgattttgtatcaagacaactggcatcaaggggttattggtattgtggccggccgtctt
aaagaaagccattatcgacctgccattgtatttgctccggcagatgatactcagcttgac
gggcaagatgcgattaaaggctcagcacgctctatcccaggcattcatattcgtgatgcc
atagagcgcatcgcagagagccatcctgagctgattacccactttggtgggcatgccatg
gcagcggggcttacgcttaaaagaaaggattttaaggcgtttgctgaggcatttgagctg
caaatgcaaagtgtggaagcttcggtatttgaggagcagcagttcaccgatggtcaactg
ctggcagaagactttagcttacagttcgttgaggcgttgacacaaaaccatatctggggt
catggttttgtgccaccacagttcgatggtgtgtttgacgtggtgcaggcgcgaatttta
aaagacaagcatttaaagctatcgctaaaataccctggggtgatgtatcctattgatgcc
atctggtttaactatgatcccaaaaaatgggattaccgtgcccaacaagtacatgtattg
tttgagcttagtattaatgagtggcagggtaatcaaaatattcagctgatggtaaaggac
gtagcggtcacccaaattagcccctaa
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