Psychrobacter sp. YP14: DLE54_04020
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Entry
DLE54_04020 CDS
T05488
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy00550
Peptidoglycan biosynthesis
psyy01100
Metabolic pathways
psyy01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
DLE54_04020 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
DLE54_04020 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
psyy01011
]
DLE54_04020 (mrdA)
Enzymes [BR:
psyy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
DLE54_04020 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
psyy01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
DLE54_04020 (mrdA)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PBP_dimer_2
DUF4407
Motif
Other DBs
NCBI-ProteinID:
AWT48778
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Position
complement(929475..931511)
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AA seq
678 aa
AA seq
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MKQPISSDIRQENRVFISRIFFAALFIFLGLSVLMARYWYLQVYSHEKYITQADNNRVKL
ISDPPSRGYIYDRNGYLLADNKPVFTAMLSPDEIKDPARTLHLLAPIFDLTEEDIIDILA
RIDKNKNDPVTVKIDITDAQMAQFSERKPFFKGVSIQSKLTRSYPYDDLFAHVIGYVGRI
NDKESKKIDKERYAGTDLIGKIGIENYYEDLLLGKPGHQAVETNVHGDVLRKLDSTPPVP
GNDIYLSLDYGLQKVAQEQLNGRRGAIVAIDPKNGDVLAFVSNPSFDPNPFISGISFKDY
GALRDDPDQPLYNRALQGMYPPASTIKPFEGLGAIHYGVMGWNDTIYDPGYFTLPGDSHR
FRDWKKGGHGTVNLTKSIVMSVDTYYYKLSYQLGIQRLHDWMIRFGFGSPTGIDLPGEKS
GVMPSPKWKKDTYDKDWLPGETISVSIGQGYFLATPLQVANATAMTANLGKKLTPHMLKR
SEGAAEVHPIDRPTGQIEFNGTQADWLKMRDAMEETVKRGTGHGIYTPRYRIAGKTGTAQ
VKSIAQGKSYNKAALDKRHWDHAWFTGFAPVEDPEIAVAVLVENGGGGGSTAAPIGRALF
DYWILRRKSDPIVPPTPDELAIIKAQKAEEKARLDAERDAQAALEEALKEQQKQSGTTQP
GDKPVEKSADKPKPAQSN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaacctatctcctcagatattcgacaagaaaatcgggtgtttatcagccgtatt
ttttttgctgcgctatttatcttcttaggcctttcggtgcttatggcccgctattggtac
ttgcaagtgtattctcacgaaaaatacatcactcaagcagacaacaaccgggttaagctc
atctcagatccgccctctcgcggttatatctatgaccgtaatggctatttgctggccgat
aataagccggtgtttacagccatgcttagcccagatgagattaaggatccggcacgtacg
ttgcatctgttagcgcctatcttcgatttaactgaagaggacattatcgatatcttggca
cgcattgacaaaaataaaaatgatccggtcacggtaaaaattgacatcactgatgcgcaa
atggcgcagtttagtgagcgtaagccattttttaaaggcgtgagcatccaaagcaaacta
acgcgcagctatccttatgatgatttatttgcgcacgttatcggttatgtgggtcgtatt
aatgataaagagtctaagaaaatagacaaagagcgttatgcaggcactgatttaattggc
aagattggtatcgagaattactatgaggatttattgctcggtaagcctgggcatcaagcg
gtcgagaccaacgtccatggcgatgtgctgcgcaaacttgatagcacgccgcctgttcca
ggtaatgacatttatttaagcctagattacggcctacaaaaggtggctcaagaacaactt
aacggccgccgcggtgctattgtcgccattgaccctaaaaatggcgatgtcttagccttc
gttagtaacccaagctttgaccctaacccttttatttcgggcatctcttttaaagattat
ggggcgctgcgcgatgaccccgatcagcctctttataaccgagcgcttcagggcatgtac
cctccggcctctaccatcaagccttttgagggtttgggcgctattcattatggggtaatg
ggctggaatgataccatttatgaccccggctactttaccctaccgggcgacagtcaccgc
tttcgtgactggaaaaaaggcggtcatggtacggttaacctcaccaaatctatcgtcatg
tctgtggatacttactattataaattgtcgtatcaattgggcattcaaagactgcatgat
tggatgatccgctttggctttggcagccctaccggtattgatttgccaggtgagaaatct
ggcgttatgccctcccctaagtggaaaaaagacacctatgataaagactggctaccgggt
gagaccatttcggtcagtattggccaaggttactttttggcgacgccgcttcaggttgct
aatgccacagccatgaccgcaaacttaggtaagaagcttaccccgcatatgcttaagcga
tctgaaggtgctgcagaggtacatcctattgatcggccgacaggtcaaattgaatttaat
ggcacccaagcggactggctaaaaatgcgcgatgcgatggaggagaccgttaaaagagga
accggtcacggtatttatactccgcggtatcgcatcgctggtaaaaccggtaccgctcag
gtcaagtccattgctcagggcaaaagctataacaaggccgctttagataagcgccactgg
gaccacgcgtggttcaccggctttgcaccggtagaagaccctgagattgctgtggccgtc
ttggtcgaaaacggtggcggtggtggctcaacagccgcaccgattggccgcgccttgttt
gattattggatactgcgccgtaaaagcgacccaatcgtaccacctacacccgacgagctg
gctattataaaagcgcaaaaggctgaagaaaaagcacgcctagatgccgaacgtgatgcc
caagctgcgctagaagaagcccttaaagagcagcaaaagcagagcggcactactcagcct
ggcgacaagcctgttgaaaaatctgccgacaagccaaaaccagcccaaagcaattaa
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