Psychrobacter sp. YP14: DLE54_04320
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Entry
DLE54_04320 CDS
T05488
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psyy
Psychrobacter sp. YP14
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psyy03016
]
DLE54_04320
Enzymes [BR:
psyy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DLE54_04320
Transfer RNA biogenesis [BR:
psyy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DLE54_04320
Prokaryotic type
tRNA splicing ligases
DLE54_04320
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6667
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AWT48833
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All DBs
Position
993910..995124
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AA seq
404 aa
AA seq
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MGIQLILNENSKKGVPVKVYTQDIAQEAIQQLRNMAQLEFVHSHIAVMPDVHVGKGATVG
SVIPTKSAIIPAAVGVDIGCGMNAVRTSLTASDLPDSLRAVRSAIEKQVPVGFNMHNQIT
AKASTLDPLGKRLKPITDKHPGLLKMLKGFERTWAKQLGTLGGGNHFIEICLDENNDVWV
MLHSGSRGIGNCIGRYFINLAKKEHQSRFGHVPDKDLSYFAEGSSSFDDYVEAVQWAQDY
AVQNRKEMMRLVLNAMQSKQAKLPPFTLTKEAINCHHNYVEQEKHFGENVYVTRKGAISA
YEGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRKMSRTKASKTFTVDELKAQTAGV
ECKKDKSVLDEIPGAYKDIDEVMDNQKDLVEVVHTLKQVLCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgggcatacagctaattttgaatgaaaacagtaaaaaaggtgtacccgttaaggtatat
acccaagatatcgcacaagaggcgatacaacaattacgtaatatggcgcagctagaattt
gtacactcacacatcgcagtgatgccagatgtacacgtgggcaaaggcgcaacggtgggc
agcgtgattccgaccaaatccgccattatccctgccgcagttggggtggatatcggctgt
gggatgaatgcggtgcgtacctcgctaactgccagcgacttgccagacagtctaagagcg
gtgcgctcagcgattgagaagcaagtgccggttggctttaatatgcacaatcaaatcaca
gccaaagcctcaacccttgatccgttaggtaaacgcttaaagccgattactgataagcat
ccggggcttttaaagatgctcaaaggttttgagcggacttgggccaaacagcttggtacg
cttggtggcggtaaccactttatcgagatttgtcttgatgagaacaacgatgtgtgggtg
atgctgcactcgggtagccgaggtattggtaactgtatcggccgctactttattaatttg
gccaaaaaagagcatcaatcacgctttggtcatgtgcctgacaaagatttatcctatttt
gctgaaggttcaagcagctttgatgactatgtcgaagcggtgcagtgggcgcaggattat
gcggtgcaaaaccgcaaagagatgatgcgtttggtattaaatgcgatgcagtctaagcag
gcaaaattaccgccctttaccctgaccaaagaagccattaactgtcaccacaactatgtg
gagcaagagaagcattttggcgaaaacgtctatgtcactcgcaaaggcgctatcagtgct
tacgagggtgagctgggtattattccaggctctatgggtgctaagtcgtttatcgtgcga
ggtcttggtaatgaagagtcgttttgctcatgttcacatggggcagggcgtaagatgagc
cgaaccaaagcatctaaaacctttaccgttgatgagcttaaagcacaaaccgcaggcgtt
gagtgtaaaaaagacaaaagcgtactcgatgaaatccccggtgcgtacaaagacatcgat
gaggtgatggataaccaaaaagacttggttgaggtggtgcatacgcttaaacaggtgctg
tgtgtgaagggatag
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