Psychrobacter sp. YP14: DLE54_04460
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Entry
DLE54_04460 CDS
T05488
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K14159
ribonuclease HI / DNA polymerase III subunit epsilon [EC:
3.1.26.4
2.7.7.7
]
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy03030
DNA replication
psyy03430
Mismatch repair
psyy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DLE54_04460
03430 Mismatch repair
DLE54_04460
03440 Homologous recombination
DLE54_04460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyy03032
]
DLE54_04460
03400 DNA repair and recombination proteins [BR:
psyy03400
]
DLE54_04460
Enzymes [BR:
psyy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DLE54_04460
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.4 ribonuclease H
DLE54_04460
DNA replication proteins [BR:
psyy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DLE54_04460
RNase H
DLE54_04460
DNA repair and recombination proteins [BR:
psyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DLE54_04460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AWT48858
LinkDB
All DBs
Position
complement(1028919..1030097)
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AA seq
392 aa
AA seq
DB search
MTPDNSKTDWLLNDPLGFDEMEADTQEPAEYDDYYAAQDPADFDNKALDAEPMPQATPDQ
DLRDTAAPQDAMAPQMAESLEANTPEVAFDGDTSRANPHFKPLLPQPINRGLSGRQLIMD
TETTGLDALKGDRIVEVGIIELVDRKFTGEKLHVYINPERGMDEEVIRVHGISEAFLADK
PTFGQIAKPLYEFMLGAEIIAHNASFDISFLSMEFDRVGLTGFADQIKITDSLALAKQQY
PGQKNTLDALVRRLNVGKMDRTFHGALLDSEILAEVYLAMTGGQVALAIDEDTQSEGAGS
HASFAHLADKLVTAKAPLSDHVLWVAKLLKKYPNLSQTQGVSCFYQVTQDTQVPSVLLQK
PFVRPTQAQQQGFSRPLVYDVSLADNLYLAVS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgactcctgataattctaaaaccgactggctgcttaacgaccccttaggcttcgatgag
atggaagctgacacccaagagcctgctgagtatgatgactattatgctgcccaagaccct
gcagactttgacaataaggcattagacgctgagcctatgccgcaagccacacctgatcaa
gacttgagggacactgcggcaccgcaagatgctatggcgccgcaaatggctgagtcacta
gaagctaacaccccagaggtggcatttgatggcgataccagccgagccaaccctcatttt
aagccattactgccgcagcctattaaccgcggtcttagcggtcgccagctgattatggat
accgagaccaccggactagatgcgctaaaaggtgatcgcattgttgaggtgggtatcatt
gagctggtggatcgcaaatttaccggcgagaaactgcatgtctatatcaaccctgagcgt
ggtatggatgaagaagttatccgagttcatggtattagtgaagcttttttggcagacaaa
cctacctttggtcagatcgccaagccgttatatgagtttatgctcggcgctgagataatc
gcgcacaacgcttcgttcgatatcagcttcttatcgatggaatttgatcgagtgggattg
accggttttgctgatcaaataaaaatcaccgactctttagcgttggccaagcagcagtat
ccaggccaaaagaatactttggatgccttggtacgccgcttgaatgtgggtaagatggac
cgcaccttccatggcgccttactcgactcggagattttagccgaggtatatctggccatg
accggcggccaggttgccttagccattgatgaagatacccaaagcgaaggcgcaggctcg
cacgcaagctttgcgcatttggcagataagctggttaccgccaaagcccctctaagcgat
catgtcctgtgggtggccaagttattaaaaaaataccccaatttgtcccaaacccaaggg
gttagctgtttttatcaagttacccaagacacgcaagtgccaagtgtgctgctacaaaag
ccttttgtccgccccactcaggcgcagcagcaaggatttagtagacccttggtgtatgat
gtgagtctggccgacaacttatatcttgccgtaagctaa
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