Psychrobacter sp. YP14: DLE54_07135
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Entry
DLE54_07135 CDS
T05488
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DLE54_07135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyy03400
]
DLE54_07135
DNA repair and recombination proteins [BR:
psyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DLE54_07135
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DLE54_07135
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
Kinesin
DUF87
Collagen_bind_2
ATPase_2
AAA_30
Microtub_bd
SWI2_SNF2
AAA
Motif
Other DBs
NCBI-ProteinID:
AWT49308
LinkDB
All DBs
Position
complement(1729667..1731784)
Genome browser
AA seq
705 aa
AA seq
DB search
MRMPEPRSSRQLNQLATQLQDEAEITGVNASGTLISSRAFEMVTDFEPAGDQPQAIEKLV
KGVEAGMDAQLLLGVTGSGKTYTMAKVISETQRPTIIMAHNKTLAAQLYGEFKSFFPNNA
VEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRLSATRALLERRDAIIISSVSSI
YGLGDPESYLKMLLHIVVGDVVDRNALIKRLVALQYTRNELDFERGTYRLRGELLDIYPA
ESEQLAVRISMFDDEVEKISWFDPLTGKTVRSVPRITIYPKSHYVTPREKLEAASKTIRA
ELDDRLEYFRANDKLIEAQRIKERTQYDLEMIQQLGYCNGIENYSQHLSGRPAGEAPPTL
FDYIPPDALLFIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSAMDNRPMKFEEWERI
KPATIFVSATPAQYELEHSEQIVEQVVRPTGLIDPEIEIRPVLTQVDDVLSEITKRREVN
ERVLITTLTKRMSEDLTDYLKEYDVKVAYLHSDIDTVERMQIIHELRTGVHDVLVGINLL
REGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAARNLNGKAILYADKITPSMQKAIE
ETDRRREKQIAFNKEHGITPKSATRSITDKIDTGEVEEDVNDNQPIPSSSGLPDVDIEIL
RSPDLLAKEINRLEKQMKQFSRELKFEDAAKVRDKVLALRAYIVQ
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatgcctgaacctagatcttcacgtcaattaaatcaattggccactcaattgcaa
gacgaagctgagattacaggggttaatgcctccggtaccttgatttccagccgcgctttt
gaaatggtaacggactttgagcctgctggcgatcaaccacaagccatcgaaaagctggta
aaaggggttgaggctggcatggatgcccagttattgcttggggtgactggctctggtaaa
acctataccatggccaaagtgattagtgaaacacagcgtccaaccattattatggcgcat
aataagacattggccgcccagttatatggagaatttaagtcctttttccctaataatgcc
gtagagtatttcgtcagttactatgattactatcagcctgaggcgtatgtcgcagccagt
gatactttcattgaaaaagacagtgccattaatgatcacattgaccaaatgcgactgtct
gcgactcgcgctttactagagcgccgtgatgcgataattatctcttcagtgtcctccatt
tatggtttgggtgacccagagagttatttaaaaatgctgttgcacattgttgtgggtgat
gtggtagaccgcaatgccttaattaagcgattggttgcgctgcaatatacccgtaatgag
cttgattttgagcggggtacttaccgcttacgtggcgagcttttggatatctatcctgca
gaatctgagcaattggcagtgcgtattagtatgttcgatgatgaggttgaaaaaatcagt
tggtttgatccattaacgggtaagactgtgcgtagtgtgccgcgcatcaccatttatcca
aaatctcactatgtgacgccgcgtgaaaaactagaggccgccagtaagaccattcgagca
gagcttgatgacagattggaatattttagagccaatgacaagttaattgaagctcagcgg
attaaagagcgcacccagtacgatctagagatgatacagcagctgggctactgtaacggc
attgagaactactcgcagcatctatcgggtcgtcctgccggcgaagcgccacctaccttg
tttgattatattcctccagatgcgctacttttcatcgatgaatcacatgtcaccgtgccc
caaatcggagccatgtataaaggtgaccgttctcgtaaagagaacttggtgaattatggt
tttcgcttgcccagtgccatggacaatcgtccaatgaaatttgaagagtgggaaagaatt
aaaccggcaacaatttttgtgtcagcaacgcctgcgcaatatgagcttgaacacagtgaa
caaattgtagagcaggtagtgcgtccaaccggtcttattgatcctgagattgagattcga
cctgtattaacccaagttgatgatgtgttatcagagattactaagcgtcgtgaagtcaat
gagcgggtattaattaccaccttgaccaagcgtatgtcagaagatttaaccgattatcta
aaagagtatgatgtcaaagtggcttatctgcattctgatattgatactgtggagcggatg
caaattatccatgagctgcgtaccggtgtgcatgatgtgttggtcggtattaacctgcta
cgcgagggtctagatatgcctgaggtgtcactggtggccatatttgatgccgataaagag
ggttttttgcgctcagagcgctcgttgattcagaccattggccgggcagctcgtaattta
aacggtaaggctattttatatgccgataaaattacgcccagtatgcaaaaggcgattgaa
gagacagatcgtcgacgcgaaaaacaaattgcctttaacaaagagcatggcattacgcct
aaatctgccacccgtagtattaccgataagattgatactggtgaagtagaggaggatgta
aatgacaatcagccaattccaagtagcagtggcttgccggatgtggatattgaaatctta
cgtagtccagacttgctggccaaagagattaatcggttagagaagcagatgaaacaattc
tcccgtgagcttaagtttgaggatgctgcaaaagtacgtgacaaggtgctggcgcttcgg
gcttatattgttcagtaa
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