Psychrobacter sp. YP14: DLE54_08035
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Entry
DLE54_08035 CDS
T05488
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psyy
Psychrobacter sp. YP14
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psyy03016
]
DLE54_08035
Enzymes [BR:
psyy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
DLE54_08035
Transfer RNA biogenesis [BR:
psyy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DLE54_08035
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
DNA_pol_A_exoN
PCDO_beta_N
Cep192_D5
DUF6014
Motif
Other DBs
NCBI-ProteinID:
AWT49462
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All DBs
Position
complement(1958044..1959339)
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AA seq
431 aa
AA seq
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MTQVASETTAAKAQSTDKKIASIYDSSKLLDVEAIARERQASADLPVHWVADFDALEACL
DDLETCDRVALDTEFIKRNTYFPILALVQINTGKAIYLIDAPKLDLTEFWVVLEEMPLMI
WHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQLQMGYQQALSQELDVHVEKAESQS
DWLARPLSHEQENYAIDDVRYLLNLYDILQQQLSKQGLTDKVVEDCQLYAKELYESANIE
DDATYLAMADFRYTPEQLAVLQAVSSWREALARATNQPKTFVLKKQAVRDLVVEMPTSIK
QLTQKTTMHRSIVRLYGDELIQVINQAKALSPEEQPPRIFPPYRSKDKSVSKAVDQVIKQ
YEEQTGVPANVLMRKKWLSSLYEIVAYDLPLEQLPEGLKGWRNEWVMSTLIPLITSHKEA
LKAGMSMQEDD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacacaggtagcatccgagacaaccgcagcaaaagcgcaatccacagacaaaaaaatt
gcctctatttatgacagcagcaagctactagatgttgaggctattgcacgtgagcgacaa
gcgtcagcagatttgcctgtgcactgggtggcagattttgatgccctagaggcctgttta
gatgatttagagacctgcgatcgggtggcactagataccgaattcattaagcgcaatact
tactttcctattctagcgctggtgcagattaataccggtaaagccatctatttgattgat
gcaccgaagcttgatttgacggagttttgggtggtattagaagagatgccattgatgatt
tggcatgcttgcggtgaggatctgggtattttttatctgctatcagaaagccctgcgctc
accaatgtgtttgatactcaaattgctttgtcttatctaaccggacagctacagatgggg
tatcagcaagcactgagccaagagcttgatgtgcatgtcgaaaaagcagagagccaatca
gattggctggcacgtccgttgagccatgagcaagaaaattatgccattgatgatgtgcgt
tatttgctcaatttatacgatatattgcagcagcaactgagcaagcagggcttaactgat
aaagtggttgaggactgtcagttgtatgccaaagagttgtatgaatcggccaatatcgaa
gatgacgccacttatcttgctatggcagattttcgctataccccagagcagttggcggta
ttacaagcagtatctagctggcgcgaggcattggctcgagcgaccaatcagcccaagact
tttgtgctaaaaaaacaagccgtacgtgatttggtggtagagatgccaaccagtattaag
cagctgactcaaaagaccaccatgcaccgcagtatcgtacgcttatatggtgatgagctg
atccaagtgattaatcaggccaaggcgctaagcccagaggagcagccaccacggattttt
ccaccctaccgctctaaagataagagtgtctcaaaagcggtcgatcaggtgattaagcaa
tatgaggaacagactggcgtgcctgccaatgtgctgatgcgcaaaaaatggctgtcaagc
ttatatgaaattgtggcctatgacttaccacttgagcagctgcctgagggtctaaaaggt
tggcgcaatgaatgggtgatgagcaccttaattccacttatcacgtcgcacaaagaagca
ctaaaagcgggtatgagcatgcaagaggatgactag
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