Psychrobacter sp. YP14: DLE54_09680
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Entry
DLE54_09680 CDS
T05488
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DLE54_09680 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psyy03021
]
DLE54_09680 (rpoC)
03400 DNA repair and recombination proteins [BR:
psyy03400
]
DLE54_09680 (rpoC)
Enzymes [BR:
psyy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DLE54_09680 (rpoC)
Transcription machinery [BR:
psyy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DLE54_09680 (rpoC)
DNA repair and recombination proteins [BR:
psyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DLE54_09680 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AWT49748
LinkDB
All DBs
Position
complement(2369294..2373514)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLDIMKSPADNGKREFDSIQITLAAPETIKSWSHGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDFECLCGKYKRRKFQGVICEKCGVEVTTAKVRRDRMGHIDLASPVAHIWFLK
SLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTSLEKYQLLDDEDYYKALEEFGDEFIA
KMGAEAVQDLLKDIDIDLEIDDLREAIPNTGSETKLKKMSKRLKLLEAFRDSNNKPEWMV
MSILPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRM
LQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVG
PTLRLHQCGLPKKMALELFKPFTYSKLLSHGMATTIKQAKKMVEREEPQVWDMLAMVIRE
HPVLLNRAPTLHRLGLQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLTLEAQL
EARTLMMSTNNILSPANGDPIIVPSQDVVLGLYYISRSAVKAKGEGMIFATVNEALRAIG
SNDLHVNAKIKVRVTETIFDEEGNSTKQTTLQETVAGRLLIWNVMPKGMRFAECNVEMTK
KNISKLMNSCYRTRGVKESVIFADQLMYLGFAQATLSGVSIGIEDMVIPPMKKELIEAAD
AEVREIEQQFEQGFVTAGERYNKVVDIWSRTNDKVAKAMMDNLATDIVINAQGEEEEQKS
FNSIFIMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLSVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVAQDLVITENDCGTEKGVRMTPHIQGGEIIEKLGDR
VLGRVVARDVMSREDEVLLAAGTLIDEHGVTVIDDNGIDEVWVRSVITCDVPHGVCAQCY
GRDLARGHKVNIGESVGVMAAQSIGEPGTQLTMRTFHVGGAASSTSVDNSISARNTGFIR
FHNMKTVDHVDGHLVIVSRSAEIGIADDVGRERERYKVPYGSSVLVKDGDEVESGQAIAK
WDPHTHPIITEFAGKARFSDIIDGSTATVKIDEATGMSSFEILGSKDRPSNSKDLRPAII
LDTTGGKEVVYFLPAETIIRVSDGEEVTAGSVLGRVPQATSGTKDITGGLPRVADLFEAR
RPKDHAIMAEMSGVVSFGSSTKGKNRFIITNEDGEVHEELIPKWRQINVFENETVARGEV
IADGPLNPHDILRLQGETALANYIVDEVQDVYRLQGVKINDKHIEVIIRQMLRKVEITDA
GDSNYFKGDQVEYADVKATNEKLLAEDKFPVQFERQLLGITKASLATESFISAASFQETT
RVLTAAAVEGKVDELRGLKENVVVGRLIPAGTGLAYHAARKKAKEGKPAYDVESALDAAF
DIEATTSAQDFRSFDEAFAQELSQDK
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttactcgatattatgaaaagccctgccgacaacggcaaacgtgaatttgat
agcattcagattacattggcagctcccgagactattaaatcatggtcacatggtgaagta
aaaaaaccagaaaccattaactaccgtacctttaagcctgagcgtgatggtctattctgt
gccaaaatctttggtccagtaaaagactttgaatgtttatgtggtaagtacaagcgccgc
aaattccaaggcgtaatctgtgaaaaatgtggcgtagaagtgaccactgccaaagttcgt
cgtgaccgcatgggccacatcgatcttgccagccctgttgcgcacatttggttcttaaag
tcattaccaagccgcatcggtttattacttgatatgacactacgtgatatcgagcgcgta
ttgtattttgaaagctatgtggtaaccgatcctggcatgacgtctttagagaagtatcag
cttcttgatgatgaagactactacaaagcattagaagaatttggtgatgagttcatcgct
aaaatgggtgctgaagcggttcaagacctgttaaaagatatcgatatcgatttagaaatt
gatgatctacgtgaagcgattccaaatactggttctgaaaccaagcttaaaaagatgtct
aagcgtctaaaattattagaagctttccgtgactctaataacaagcctgagtggatggtt
atgagcattttgcccgtactaccaccagatttacgtcctctagtaccgctagaaggcggc
cgttttgcgacctcagatctaaacgacttatatcgccgtgtgattaaccgtaacaaccgt
ttaaagcgtctattagagcttaacgcccctgacattatcgtacgtaacgaaaaacgtatg
ctacaagagtcagtggatgcgctacttgataacggtcgtcgtggccgtgccatcacgggc
agcaacaagcgtccattgaaatcgcttgctgacatgattaaaggtaagcaaggtcgtttc
cgtcaaaacttactaggtaagcgtgttgactactctggccgttcggtgattgttgttggt
ccaacactgcgtctacatcagtgtggtctgcctaagaaaatggcacttgagctattcaag
ccatttacttactcaaaactattgtcacacggcatggcaacaaccatcaaacaagcgaag
aagatggtagagcgtgaagagccacaagtttgggatatgctggccatggttatccgtgag
catccagtattactaaaccgtgcgccaacgctacacagattgggtcttcaagcatttgag
cctgtactaattgaaggtaaagccattcagctgcatccgctggtatgtaccgcgtttaac
gctgacttcgacggtgaccaaatggcagtacacgtgccattgactctagaagcacagcta
gaagcccgtacgttgatgatgtcaaccaacaacattctatcacctgctaacggtgatccg
attattgtgccatcacaagacgttgtactgggtctgtactacatcagccgttcagcagtt
aaggctaaaggcgaaggcatgatctttgcgaccgttaacgaagcattacgcgctattggt
tcaaacgacctacatgtaaacgccaaaattaaagtacgtgtgactgagaccatctttgat
gaagagggtaactcgaccaaacaaaccacgctgcaagaaactgtggccggtcgtctactt
atctggaatgtcatgccaaaaggtatgcgttttgctgagtgtaacgttgagatgactaag
aaaaacatctcaaaactaatgaactcttgctaccgtacgcgcggcgtgaaagaaagtgtt
atcttcgctgaccaattaatgtacctaggttttgctcaagcaaccctatcaggtgtgtct
attggtatcgaggatatggttatcccgccaatgaaaaaagagcttatcgaagcggctgat
gctgaagttcgtgaaatcgaacaacagtttgagcaaggtttcgtaaccgctggtgagcgc
tacaacaaagttgtcgatatctggtcacgtaccaacgacaaagtggctaaagcgatgatg
gataacttggcgactgatatcgttatcaacgcacaaggtgaagaagaagagcaaaaatca
ttcaactctatcttcatcatgtcagactctggtgctcgtggtagtgcagcgcagattcgt
cagttggccggtatgcgtggtctaatggctaagccagatggctctattattgaaaccccg
attaaggccaacttccgtgaaggtctatcggttcttcagtacttcatctcgacccacggt
gcgcgtaaaggtcttgccgatacggcacttaagacagccaactcgggttacttgactcgt
cgtttggttgacgtggcgcaagatttggtaatcactgagaacgattgtggtaccgaaaaa
ggcgttcgcatgacaccacacattcaaggcggtgaaatcattgagaaactaggtgaccgt
gttctaggtcgtgtggttgctcgtgatgtgatgagccgtgaagatgaggtgttattagcc
gcaggtacgctgattgatgagcatggcgtaacggttattgatgacaatggtatcgatgaa
gtatgggtacgctcagttattacttgtgatgtaccacacggtgtgtgtgctcagtgttat
ggccgtgacttggcacgtggtcacaaagtgaatattggtgagtctgtgggtgttatggcg
gctcagtcaatcggtgagccaggtactcagttaaccatgcgtacgttccacgtgggtggt
gccgcaagttctacttcagtagacaatagcatctctgcccgcaacacaggtttcatccgc
ttccataacatgaagacggtggaccacgtggatggtcacttagttatcgtatcgcgttca
gctgaaatcggtattgctgatgatgttggccgtgagcgtgagcgctataaagttccttat
ggttcaagcgtactggtgaaagacggtgatgaagttgaaagcggacaagcgattgctaaa
tgggatccgcacacgcacccaattatcacagaattcgcgggtaaggcacgtttcagcgac
attatcgatggctcaactgccaccgttaagattgatgaagcaaccggtatgagctcgttt
gaaatcttgggttcaaaagaccgtccaagtaactcaaaagacttacgtccagcgattatt
ctagatactacgggcggtaaagaagtggtttacttcttacctgctgagaccattatccgt
gtttctgatggcgaagaagtgacagcaggttcggtattaggccgtgtaccacaagccacg
tcaggtaccaaagatattaccggtggtctaccacgtgttgctgacttgttcgaagcacgt
cgtccgaaagatcatgccatcatggcagagatgtcaggtgtggtaagcttcggctcatca
actaaaggtaagaaccgcttcatcatcactaatgaagatggcgaagtacatgaagagctg
attccaaaatggcgccaaatcaacgtgttcgagaacgaaaccgttgcccgtggtgaagtt
attgcagatggcccattaaatccgcatgacatcttgcgtctacaaggcgaaactgcgctg
gctaactacattgtggatgaagtacaggatgtataccgcttgcagggcgttaagatcaac
gataagcacattgaagtgattatccgtcagatgttgcgtaaagtagaaattactgatgcc
ggtgattcaaactacttcaagggcgatcaggtggaatacgctgatgtgaaagccactaac
gaaaaactgcttgctgaagataaattcccagtacagtttgaacgtcagttattgggtatc
accaaagccagcttggcaactgaaagcttcatctcagcggcttcgttccaggaaaccaca
cgcgtattaactgctgctgctgttgagggtaaagttgatgagctacgtggtctaaaagaa
aacgtggttgtgggtcgtctgatcccagcgggtacaggtcttgcttatcatgcggcgcgc
aaaaaagccaaagaaggcaaacctgcttatgatgttgaaagtgctctagatgccgctttt
gatatcgaagccacgacctcagctcaagacttcagaagcttcgatgaagcgtttgctcaa
gagttgagtcaagacaaatag
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