Stutzerimonas stutzeri ATCC 17588 = LMG 11199: PSTAB_0004
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Entry
PSTAB_0004 CDS
T01571
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
psz
Stutzerimonas stutzeri ATCC 17588 = LMG 11199
Brite
KEGG Orthology (KO) [BR:
psz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psz03032
]
PSTAB_0004 (gyrB)
03400 DNA repair and recombination proteins [BR:
psz03400
]
PSTAB_0004 (gyrB)
Enzymes [BR:
psz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PSTAB_0004 (gyrB)
DNA replication proteins [BR:
psz03032
]
Prokaryotic type
DNA Topoisomerases
PSTAB_0004 (gyrB)
DNA repair and recombination proteins [BR:
psz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PSTAB_0004 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
MTES_1575
Motif
Other DBs
NCBI-ProteinID:
AEJ03285
UniProt:
F8H2H9
LinkDB
All DBs
Position
4180..6594
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AA seq
804 aa
AA seq
DB search
MSENHTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSD
ISITIHTDESITVRDNGRGIPVDIHEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG
VSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGETDTSGTQIHFKPSAETFQNI
HFSWDILAKRLRELSFLNSGVGIVLRDERTAKEELFKYEGGLSAFVAYLNTNKTAVNQVF
HFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEQE
GLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADF
LLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEL
YIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGR
EEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPPLYKVKRG
KQEQYIKDDEAMEEYLTQSALEEASLHVNEDAPGLAGEALERLVNDYRTVMKTLQRLSRL
YPLELTEHFIYLPRVTLEQLADHSAMQAWLEQYSARLKGGERSGLVYNLSLREDKERHLW
LPEVEISSHGLASYITFNRDFFGSNDYRTVTALGEKLNSLLEEGAYVQRGERKKPVASFK
EALDWLMNEGTRRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIAADQIFNTL
MGDAVEPRREFIETNALAVSNLDF
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagaaccacacgtacgactcttcgagcatcaaggtactgaaaggtcttgatgcc
gtgcgtaagcgccctggcatgtatatcggcgacaccgatgacggcaccggcctgcaccac
atggtcttcgaagtcgtcgataactcgatcgatgaagcgctggccggctactgcagcgat
atttccatcaccatccataccgatgaatccatcaccgtgcgcgataacggccgcggcatt
ccggtggatattcacgaagaaggcgtatcggcagccgaggtcatcatgaccgtgctgcac
gcaggcggtaagttcgacgacaactcctacaaggtatccggtggcctgcacggcgtgggt
gtctcggtagtgaatgcattgtccgaggagctgctgctgaccatccgccgcgaaggcaag
gtgtgggaacagctctatcgccatggtgtcccgcaagcgccgctcgcggccgtgggcgag
accgatacgtcgggcacgcagatccatttcaaaccctccgccgagaccttccagaacatc
catttcagctgggacattctggccaagcgtctccgcgaactgtcctttctcaattccggc
gtgggtatcgttctgcgcgacgaacgcacggccaaggaagaactgttcaagtacgaaggc
ggcctcagcgccttcgtcgcctacctgaacaccaacaagaccgcggtgaatcaggtgttc
cacttcaacgtccagcgtgacgatggcgtcggcgtggaagtcgcgctgcagtggaacgac
agcttcaacgagaacatcctctgctttaccaacaacattccccagcgtgacggcggcact
cacctggccggcttccgctccgcactgacgcgtaacctgaacaactacatcgagcaggaa
ggcctggcgaagaagcacaagatcgccaccaccggtgacgatgcgcgtgaaggtctgacc
gcgatcatctcggtcaaggtgccggatccgaagttcagttcccagaccaaggacaagctg
gtttcctccgaggtgaagaccgcggtggaacaggagatgggcaagtacttcgccgacttc
ctgctggagcatccaaacgaggcgaaggcggtagtcggcaagatgatcgacgctgcccgc
gcccgtgaggctgcgcgcaaggcacgggaaatgacccggcgcaaaggcgcgctggatatc
gccggcctgccgggcaagcttgccgactgtcaggagaaggatcctgcgctgtccgaactg
tacatcgtggagggtgactccgcgggtggctcggccaagcagggccgcaatcgcaagacc
caggcgatcctcccgctcaagggcaagattctcaacgtcgagaaggcacgcttcgacaag
atgctctcgtcccaggaagtcggcacgctgatcaccgcgctgggttgcggcatcggccgc
gaggaatacaacatcgacaagctgcggtaccacaacatcatcatcatgaccgatgctgac
gtcgacggttcgcacatccgcaccctgctgctgaccttcttcttccgccagttgcccgag
ctgatcgagcgtggctacgtgtatatcgcgcaaccgccgctatacaaggtcaagcgcggc
aagcaggagcagtacatcaaggacgacgaggcgatggaggaatacctcacccagtcggcc
ctcgaagaggcgagcctgcacgtcaacgaggacgccccaggcctcgccggcgaagcgctg
gaaagactggtcaacgactaccgtacggtgatgaagactctgcagcgcctgtcgcggctg
tacccactggagctgaccgagcacttcatctatctgcctcgggtcacgctcgagcagctg
gctgaccactccgcgatgcaggcctggctcgagcagtacagcgcgcggctcaagggcggc
gagcggtccgggctggtctacaacctcagcctgcgcgaggacaaggaacgccacctgtgg
ctcccggaggtggagatcagctcccacggcctggccagctacatcaccttcaaccgtgat
ttcttcggcagcaacgattaccgcacggtgaccgcgctgggcgagaagctcaacagtctg
ctggaagaaggtgcctatgtgcagcgtggcgagcgcaagaagccggtcgccagcttcaag
gaagcgctggactggctgatgaatgagggcacccgtcgacacagcgttcagcgctacaag
ggtctcggcgagatgaacccggaccaactctgggaaaccaccatggacccgaacgtccgg
cgcatgctcaaggtgacgatcgaagacgccatcgcggcggaccagatcttcaacacgctg
atgggcgatgcagtggaaccccgccgggagttcatcgaaaccaacgcactggcggtctcg
aatctggacttctga
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