Stutzerimonas stutzeri ATCC 17588 = LMG 11199: PSTAB_1064
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Entry
PSTAB_1064 CDS
T01571
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psz
Stutzerimonas stutzeri ATCC 17588 = LMG 11199
Pathway
psz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PSTAB_1064 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psz03400
]
PSTAB_1064 (sbcB)
Enzymes [BR:
psz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PSTAB_1064 (sbcB)
DNA repair and recombination proteins [BR:
psz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PSTAB_1064 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSTAB_1064 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSTAB_1064 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AEJ04345
UniProt:
A0AA42PB90
F8H147
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All DBs
Position
1129220..1130653
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AA seq
477 aa
AA seq
DB search
MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLV
TGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAR
EWQGGNSRWDLIDLVRTAYALRPEGIGWPEDDGRVTLKLERLSAANGLEHLNAHDALSDV
RATIGLARLIRERQPRLYEYLFNLRRKHAVLEQVTLLEPLVHVSGRFSAARHFLSVVLPL
AWHPRNRNALIVCDLQAEVRPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINKCPV
LAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQQLY
DGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSAEERVRWQ
RFCQQRLSGEIAGAPNTLAQFEADIQQFMLTATPAQQQLLQQWREYGRALGERYGCN
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgactccaagcatcttctggtacgacttcgaaaccacaggcatatcgcccagccgcgac
cgccccttgcaggttgccggtatccgcaccaacgaggcgctcgaggaaatcggcgagccg
ctgaacatctactgtcgacccggcgacgacatccttccccatcccgccgcgtgcctggtc
acgggaatcacgcctgcagttctgcagcagaaggggatgtgcgaggcccagttcgttcat
catctgcatcgggaattgtcgactcccggaacctgcggcgccggctacaacagcctgcgt
ttcgacgacgaagtgacccgctacagcctgtaccgcaatttctacgatccgtatgcacgc
gaatggcagggcggcaacagccgttgggatctgatcgatctggtgcgtaccgcctatgcg
ctgcgcccggaaggaattggctggccggaagacgacgggcgggtgacgctcaagctcgag
cgtttgagtgccgccaatgggctggaacatctgaacgcccacgacgcgctgtccgatgtg
cgcgccaccattggcctcgccaggctcattcgtgagcggcagccgcgtctgtacgaatat
ctcttcaatctgcgtcgcaaacatgcggtgctcgagcaggtcaccctgctggagccgctg
gtgcacgtgtccggacgcttctcggctgcccggcatttcctctccgtggtgctgccgctg
gcctggcatccgcgcaaccgcaatgcgctgatcgtttgcgatctgcaagccgaggtgcgg
ccgttatggctggaaagcgcggaaacgctgcgacagcggctctacacgcgtcgcgacgag
ctggccgagggcgaattaccggtcccgctgaagctcgtgcacatcaacaagtgcccggtc
ctggcgccgctcaaggtcttgcgcgaggcggatatccagcgtctggagctggacttgcct
gcgtgccacgaacgtgctgacgcgctacgcgaacagcgccacgtgtggagcccaaagctg
gacgaggtgtaccgcgaagaggggttcatcggtgtggacgatccggaacagcaactctat
gacggctttctgggcgagcgcgatcggcggctgtgcgatcggattcgcgagatggcgccg
gcagagctcgctcggcaacagtgccacttcgatgatgtacggttagaggaattgctgttc
cgttatcgcgcgcgcaactttccggaagcgttatcggctgaagagcgggtgaggtggcaa
cggttctgccaacagcgccttagcggcgagatagccggcgcgcccaatacccttgcgcag
ttcgaggcggatatacaacagttcatgctcactgccaccccggcgcagcagcagctattg
cagcagtggcgtgaatacgggcgcgccttgggtgagcgttacgggtgcaactag
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