Stutzerimonas stutzeri ATCC 17588 = LMG 11199: PSTAB_1079
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Entry
PSTAB_1079 CDS
T01571
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psz
Stutzerimonas stutzeri ATCC 17588 = LMG 11199
Pathway
psz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSTAB_1079 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psz03019
]
PSTAB_1079 (rhlB)
Enzymes [BR:
psz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSTAB_1079 (rhlB)
Messenger RNA biogenesis [BR:
psz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSTAB_1079 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AEJ04360
UniProt:
F8H162
LinkDB
All DBs
Position
complement(1141968..1143296)
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AA seq
442 aa
AA seq
DB search
MTQPGATDETQSKPQPSQRSADKPRRQRSSKPPKPAAPAWKLEDFVVEPAEGKTRFHDFK
LAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQLLETP
PPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQLESRY
CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT
LLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLITQN
DWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATD
VAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAFALPPIEAL
IGRKIQCEMPPAELLAPVPRSR
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcagccgggcgcgacggacgaaacccagtccaagccgcaaccctcccagcgcagc
gccgacaaaccgcgtcgccagcgcagcagcaaaccgccgaaacccgccgcgccggcctgg
aagctggaagacttcgtggtcgagccggccgaaggcaagacccgctttcatgacttcaag
ctcgcaccggagctgatgcacgcgatccatgacctgggcttcccctattgcacaccgatc
caggcacaggtgctgggctacacgctcaagggccgcgatgccatcggccgtgcacagacc
ggcacaggcaagacggcggccttcctgatctcgaccatcacccagctgctggaaacacca
ccgcccaaggaacgctacatgggcgagccgcgtgccctgatcatcgctccgactcgcgaa
ctggtggtgcagatcgcaaacgatgcgctggacctgaccaagtacaccggactcaacgtg
atgagctttgtcggcggcatggatttcgacaagcagctcaagcagctggagtcgcgctac
tgcgacatcctggtggccacccccggccggttgctggacttcaaccagcgcggcgaagtc
cacctggacatggtcgaggtgatggttctcgacgaagccgaccgcatgctcgacatgggc
ttcatcccgcaggtccgccagatcatcaggcagacgccacccaagagcgaacgccagacc
ctgctcttttccgccaccttcaccgacgacgtgatgaacctggcgcagcagtggacaacc
aaccccgccgtggtcgagatcgaaccggagaacgtggccagcgataccgtcgagcagcac
gtctatgccgttgccggcagcgacaagtacaagctgctgtacaacctgatcacccagaac
gactggacgcgggtaatggtcttcgccaatcgcaaggacgaagtacgacgcatcgaagag
cgcctgaccaaggatggcatcagtgcagcgcagatgtccggcgacgtcccgcagcacaag
cgcatccgcacgctggagggctttcgcgagggcaagattcgcgtgctggtcgccaccgac
gtcgccggtcgcggcattcacgtcgatggcatcagccatgtgatcaacttcaccctgcca
gaagacccggacgattacgtgcaccgcatcggtcggaccggccgcgccggcaccagcggc
acctccatcagcttcgctggcgaggacgacgccttcgctctgccgcccatcgaggcactg
atcggccgcaagatccagtgcgagatgccgccggcggaactgcttgcgcccgtccctcgc
tcgcgctga
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