Stutzerimonas stutzeri ATCC 17588 = LMG 11199: PSTAB_1623
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Entry
PSTAB_1623 CDS
T01571
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psz
Stutzerimonas stutzeri ATCC 17588 = LMG 11199
Brite
KEGG Orthology (KO) [BR:
psz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psz03032
]
PSTAB_1623 (topA)
03400 DNA repair and recombination proteins [BR:
psz03400
]
PSTAB_1623 (topA)
Enzymes [BR:
psz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PSTAB_1623 (topA)
DNA replication proteins [BR:
psz03032
]
Prokaryotic type
DNA Topoisomerases
PSTAB_1623 (topA)
DNA repair and recombination proteins [BR:
psz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PSTAB_1623 (topA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AEJ04904
UniProt:
F8H748
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Position
1701248..1703851
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AA seq
867 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKAAAAEAPA
LSPKEKAKRQLIARMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLDREG
EAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDLNRVNAQQARRFLDRVVG
YMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLATAQQAKVRF
EVAREKGEAFKPLNEAQANAALEKLKGASYSVTKREDKPTSSKPSAPFITSTLQQAASNR
LGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAISMVRGFIEGEFGDKYLPEKPNLYS
SKEGAQEAHEAIRPSDVNLRPNQLSGMERDAERLYELIWRQFVACQMPPAQYLSTSVTVE
AGDFELRAKGRILKFDGYTKVMPQQSKAGEDDVLPEMSKGDAMKLLKLDPSQHFTKPPAR
YSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSEKMGDIVTERLSESFNN
LMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDFRKKLEVAESSENGMRANQPTLTDIP
CKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTVNLIPGDEIAADDEGESESRVLLGK
HRCPICSTAMDAYLLDETHKLHICGNNPDCSGYEIEEGQYRIKGYEGPSLECDKCGSEMQ
LKTGRFGKFFGCTNAECKNTRKLLKNGEPAPPKMDAVKMPELKCEKVDDTYVLRDGASGL
FLAASQFPKNRETRAPLVRELIPHKDEIDPKYHFLLQAPQQDPDGRPAVIRFSRKTKEQY
VQSEVDGKPTGWKAFYDGGKWQVEDKR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctggtcatcgtggaatcaccggccaaggccaagacaatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccacatccgcgaccttcccaccagc
ggctcggccaacaaggagccggtcaagcgcggcaaggctgcggcggccgaagcgcctgcg
ctgtcgcccaaggagaaggccaagcgtcaactgatcgcgcgcatgggcgtcgatccggaa
catggctggaaggccaagtacgagatcctgcccggcaaggaaaaggtcatcgaggagctg
cgccgcctggccaaggaagccgacaccatctatctcgcgaccgacttggatagagaaggg
gaggccatcgcctggcacctgcgcgagtccatcggtggcgatgacagccgttacaagcgc
gtggtgtttaacgagatcaccaagaaggcgatccaggaggccttttcccagccgggcgag
ctcgatctgaatcgcgtcaacgcccagcaggcgcggcgcttcctcgatcgggtggttggc
tacatggtttcgccgctgctctgggcgaagatcgcccgcggcctgtctgccggtcgcgtg
cagtcggtggcggtgaaactggtggtcgagcgcgagcgcgagatccgcgccttcgtcccg
gaagaatactgggaagttcatgccgacctggcgactgcccagcaggccaaggtgcgcttc
gaagtcgcccgcgagaagggcgaggcgttcaagccgctgaacgaggcgcaggccaatgct
gcgctggagaagctcaagggcgccagctacagcgtgaccaagcgcgaggacaagccgacc
agcagcaagccttcggcgcccttcatcacctcgaccctgcagcaggcggcgagcaatcgc
ctcggcttcggcgtgaagaagacaatgatgatggcccagcgcttgtacgaagccggttac
atcacctacatgcgtaccgactcgaccaacctgtcggccgacgccatcagcatggtgcgc
ggtttcatcgaaggcgagttcggtgacaagtacctgcccgaaaagccgaacctgtattcg
agcaaggagggcgcccaggaagcgcacgaggcgattcgcccgtccgatgtcaacctgagg
ccgaaccagctgtccggcatggagcgcgatgccgagcgcctgtacgagctgatctggcgc
cagttcgtcgcctgccagatgccgccggcgcagtacctgtccaccagcgtgacggtcgag
gccggtgacttcgagctgcgtgccaaggggcgcatcctcaagttcgacggctacaccaag
gtcatgccgcagcagagcaaggctggcgaggacgacgtgctgccggaaatgagcaagggc
gacgccatgaagctgctcaagctcgacccgagccagcacttcaccaagccgccggcccgc
tattccgaagccagcctggtcaaggagatggagaagcgcggcatcggccggccatccacc
tatgcggcgatcatttccaccatccaggatcggggctacgtctcgctgcacaatcgccgt
ttctactcggaaaagatgggcgacatcgtcaccgaacgcctctccgagagcttcaacaac
ctgatggactatggcttcaccgctggcatggaagagcatctggacgacgtcgcccagggc
gagcgcgactggaagcatgtgctggacgagttctacggtgatttccgcaagaagctcgag
gtcgccgagtccagcgagaatggcatgcgtgccaaccagccgaccctgacggacatcccg
tgcaaggtctgcggccggccgatgatgatccgcaccgcgtccaccggcgtgttcctcggt
tgttccggctacagcctgccgccgaaggagcgctgcaagtccacggtgaacctcattccc
ggtgacgagatcgccgcggatgacgagggtgagtccgaatcccgcgtgctgctgggcaag
catcgctgcccgatctgcagcaccgcgatggatgcctacctgctcgacgagacgcacaag
ctgcacatctgcggcaacaacccggactgctccggctacgagatcgaggaaggtcagtac
cgtattaaggggtacgaggggccaagcctggaatgcgacaagtgcggcagcgagatgcag
ctcaagaccggtcgtttcggcaagttcttcggctgcaccaacgccgaatgcaagaacacc
cgcaagctgctgaagaatggcgagccggcgccgccgaagatggatgcggtaaagatgccg
gagctcaagtgcgagaaggtcgacgacacctacgtactgcgcgatggcgcttccgggttg
ttcctggctgccagccagttcccgaagaatcgcgagacccgcgcgccgctggtgcgagag
ctgatcccccacaaggacgagatcgatcccaagtaccacttcctgctccaggcaccgcag
caggatccggacggccgcccggcggtgatccgcttcagccgcaagaccaaggagcagtac
gtgcagagcgaagtggatggcaagcccaccggctggaaggcgttctacgacggcggcaag
tggcaggtcgaagacaagcgctga
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