Stutzerimonas stutzeri ATCC 17588 = LMG 11199: PSTAB_2417
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Entry
PSTAB_2417 CDS
T01571
Name
(GenBank) DEAD-box ATP dependent DNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psz
Stutzerimonas stutzeri ATCC 17588 = LMG 11199
Pathway
psz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSTAB_2417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psz03019
]
PSTAB_2417
03009 Ribosome biogenesis [BR:
psz03009
]
PSTAB_2417
Enzymes [BR:
psz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSTAB_2417
Messenger RNA biogenesis [BR:
psz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSTAB_2417
Ribosome biogenesis [BR:
psz03009
]
Prokaryotic type
rRNA helicases
PSTAB_2417
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
AAA_22
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AEJ05698
UniProt:
A0A0H3YXP4
A0A4P1S8T3
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All DBs
Position
complement(2609866..2611527)
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AA seq
553 aa
AA seq
DB search
MTQEIGGFAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAF
ALPILSKIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTNQKVAEARLPNAQQVLDARIKKLTSSLAPLVADAEATHGELLDKLVADIGCSPRAL
AAALLRKATNGQALTLAEVEKEQPLVPTSGPRERSDRPERSGDRERRAPVPLAEGRARCR
TPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLGKLKDTRV
GGKQLKLRRYRED
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggctttgccgcactcggtattcactccgctgttctggctgcc
atcagcgcagtcggctacgaagaaccatcccccatccaggcccaggcgatcccggtgatc
cttggtggccacgacatgatcggccaggcccagaccggtaccggcaagaccgccgcattt
gcgctgccgatcctgtccaagatcgatccagccaagcgcgagccgcaggcgctgatcctc
gcgccgacccgcgaactcgcgctgcaggtcgccaccgcgttcgaaacctattccaagcag
atgccgggcgtcagcgtcgtcgccatctacggtggtgccccgatgggcccgcagctcaag
gccatccgccagggcgcgcaggttatcgtcgccactccgggccgcctggtcgaccacctg
agccgtaacagcgagctgctgtcgaccatccgcttcctggtcctcgacgaagccgacgag
atgctcaagctcggcttcatggacgatctggaagtgatcttcgaagccatgccggaaagc
cgccagagcgtgctgttctccgccacgctgccgcactccatccgtgccatcgccgagaag
cacctgcgcgagccgcagcacatcaagatcgctgccaagacccagaccgtcgcgcgcatc
gaacaggcgcacctgatggtccacgccgaccagaagatccaggccgtgctgcgcctgctg
gaagtcgaggatttcgacgcgctgatcgccttcgtgcgcaccaagcaggccacccttgac
ctggccgccgcgctggaagccaagggctacaaggccgctgcgctgaacggcgacatcgcg
cagaaccagcgtgaacgcgtcatcgaatcgctcaaggatggccgcctggatatcgtcgtc
gccaccgacgtcgccgcccgtggtatcgacgtgccgcgcatcacccacgtattcaacgtg
gacatgccgtacgatccggagtcctacgtgcaccgcatcggccgtaccggccgtgccggt
cgcgaaggtcgcgcgctgctgctggtcactccgcgtgagcgtcgcatgctgcaggtcatc
gaacgggtgaccaaccagaaggtcgccgaagcccgcctgcccaatgcccagcaagtgctg
gatgcccgtatcaagaagctgaccagcagcctcgcgccgctggtcgccgatgcagaagcc
actcatggcgagttgctcgacaagctggttgccgacatcggctgcagcccgcgtgccctg
gccgctgcgttgctgcgcaaggccaccaatggtcaggcgctgactcttgcggaagtggag
aaagagcagccgctggtccccaccagtggtccgcgcgagcgttccgatcgtccggagcgc
agtggcgatcgtgagcgtcgcgcacccgtacccctggccgaaggccgcgcccgctgccgt
acgccgctgggcgcacgcgacggtatcgctgcccgcaacctgctcggcgccatcctcaac
gaaggcggccttgcgcgcgaagccatcggccgcatccaggtgcgtgacagcttcagcctg
gtcgaactgccggaagatggcctcgatcgcctgctcggcaagctcaaggacacccgcgtc
ggcggcaagcagctcaagctgcgccgttatcgcgaagattga
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