Stutzerimonas stutzeri ATCC 17588 = LMG 11199: PSTAB_3898
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Entry
PSTAB_3898 CDS
T01571
Name
(GenBank) DEAD-box ATP dependent DNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psz
Stutzerimonas stutzeri ATCC 17588 = LMG 11199
Pathway
psz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSTAB_3898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psz03019
]
PSTAB_3898
Enzymes [BR:
psz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSTAB_3898
Messenger RNA biogenesis [BR:
psz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSTAB_3898
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEJ07179
UniProt:
F8H444
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All DBs
Position
4204850..4206667
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AA seq
605 aa
AA seq
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MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKVYARDLPLKSTCIFGGVGMN
PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRIAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKGIERMTKQRIPEGDLMGFDASAIEAEKPEVREPRQPRPQRGERKARAEREKPAEKGTE
QKERNRRSQSKARKPARDGAASEAQTAARPPQLPPNRAPDEFLDDEVDNFGNRVDYVSPY
QNKQNRGRRPGAPAPAGAAPRAAGAARPGAAGAPAGKGKRPGTGQGQAARSGQPRNGQPR
RKNDSRRIEEPAVARQEAAKPREKQPVIIHKESKIDRLPSLDQLEQLPTRPRGEKPALLT
RNREA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttggccggtgccgtcgaggccgccggt
tacacccagcctacccccgtgcaacagcgggcgattcccgccgtgttgcaaggccgtgac
ctgatggtcgccgcccagaccggaaccggtaagacaggcggtttcgccctgccggtactc
gaattactcttcccgggcggccacccggatcgcgagcaccgctacggcccgaaacagccg
cgcgtactggtgctgacaccgacccgcgagctcgccgcccaggttcacgacagcttcaag
gtctatgcccgtgacctgcctctgaagagcacctgcatcttcggcggcgtcggtatgaac
ccgcagatccaggcggttgccaagggcctcgacgtgctggtcgcctgcccaggccgtctg
ctcgatctggccaaccagaaggccatcgatctgtcgcacgtggaaattctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaggtcctggccaaa
ctgccggccaagcgccagaacctgctgttctcggccaccttctccaaagacatcaccgat
ctggcgggcaagctgctgcacaaccccgagcgcatcgaggtcacgccgccgaacaccacg
gtcgagcgtatcgagcagcggatgttccgcatcgccgccagccacaagcgtgccctgctc
gctcacctgatcactcagggcgcctgggagcaggtgctggtcttcacccgtaccaagcat
ggcgccaatcgcctagccgagtatttggagaagcacggcctgccggctgcggcgatccac
ggcaacaagagccagaacgcccgcaccaaggctctggccgacttcaaggccaaccaggtg
cgcattctggtcgccaccgatatcgcagcccgcggtctggatatcgaccagctgccccat
gtggtcaacttcgagctgcccaacgtcgaggaagactacgtacaccgcatcggccgtact
ggccgtgccgggcgcagcggtgaagccatttcgctggtcgcgccggacgaggaaaagctg
ctcaagggcatcgagcgcatgaccaagcagcgcatccctgaaggcgatctgatgggtttc
gatgccagcgccatcgaggcggagaagccggaggtgcgcgaaccgcgccagccgcgtccg
cagcgtggcgaacgcaaggctcgcgctgagcgcgaaaagccggcagagaaaggcaccgag
cagaaggaacgcaaccgccgcagccagagcaaggcgcgcaagcctgctcgcgatggagcc
gccagtgaagcgcaaaccgctgctcgacctccgcagctgccgccaaaccgtgctccggac
gagtttctcgatgacgaagtggacaacttcggcaatcgcgtcgactacgtcagcccgtat
cagaacaagcagaaccgcggccggcgccctggtgctccggctccggctggtgccgcgcca
cgtgccgccggagccgcacgccctggcgctgctggtgctcccgccggcaagggcaaacgt
ccgggtacgggccaaggccaggcggcacgcagcggccagccgcgcaacggccagccacgg
cgcaagaacgacagccgacggatcgaagagccggccgtcgcgcgccaggaagctgccaag
ccgcgtgaaaagcagccggtgatcatccacaaggaatcgaagatcgatcgcctgcccagt
ctggaccagctcgagcagctgccaacccggccacgaggtgagaagccggccctgctgacg
cgtaaccgcgaggcataa
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