Stutzerimonas stutzeri ATCC 17588 = LMG 11199: PSTAB_3993
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Entry
PSTAB_3993 CDS
T01571
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
psz
Stutzerimonas stutzeri ATCC 17588 = LMG 11199
Pathway
psz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PSTAB_3993 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psz03400
]
PSTAB_3993 (recD)
Enzymes [BR:
psz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PSTAB_3993 (recD)
DNA repair and recombination proteins [BR:
psz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSTAB_3993 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
Helicase_RecD
AAA_22
SLFN-g3_helicase
UvrD_C
AAA_16
nSTAND3
AAA_28
CbiA
DEAD
Flavi_DEAD
DUF87
T2SSE
AAA
ATPase
Motif
Other DBs
NCBI-ProteinID:
AEJ07274
UniProt:
F8H5R8
LinkDB
All DBs
Position
complement(4312111..4313961)
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AA seq
616 aa
AA seq
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MTLADLPLGPLERAFVASLQRLEPQAPEAVLLAATLCCEALAAGDVCLPLERLAGRRPWP
DVDLSMPALPVWHAQLEASTLVGTPDDYAPLTLVGDRLYLARYQAYEQQLAEQLLARTGD
APEVDEARLAESLARLFAFNQQRPDWQRLAAAQAVRRRLAVISGGPGTGKTTTVVRLLAA
LLEQPGGERLAIGLAAPTGKAAARMAEAIRNAKAELPVSDAVKEALPDEARTLHRLLGSR
GDSPRVRHDAANPLALDVLVVDEASMVDLALMAKLVVALPPKARLILLGDKDQLAAVEAG
AVFAELCEGRGFDAGAASELERITGQPVPVETPRSRLGDAVVLLTHSHRFAGDSGIGELA
RRINAGDAKGTVALLQEGRADLAWNATPGATALIERLEQGYGGYLQAARQGDPGPAFEAF
NGFRALTAQREGPFGVTGINEALETRFRRRLGVPARERWYPGRAVMVRQNDYALGLFNGD
IGLCLKTEQGLRVFFEGDNGYRGFAPARLPSHDSAFAMTVHKSQGSEFTEVLLALPDQPS
PLLTRALFYTGITRAKRRVEIWALPARLAEAVSTRAERAAGLAERLVLAGAVADADAVPE
APIGAAPAEGDQLSLF
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgacccttgccgatctgcccctcggcccgctggagcgcgcctttgtcgccagcctgcaa
cgcctggaaccgcaggcgcccgaagcggtgctactcgccgccacgctgtgctgcgaggcg
ctggcggccggcgatgtctgtcttccactggaacgcctggccggaaggcgcccctggccc
gatgtcgatctcagcatgccggcgctgcccgtctggcacgcacagctcgaagcttccacg
ctggtcgggacaccggacgactatgcgccgctgaccctggtcggcgaccggctctacctg
gcccgctaccaggcctacgaacagcagctggccgaacagctgctggcccgcaccggcgat
gcgcccgaggtggacgaagcacggctcgccgagagcctggcgcgcttgttcgccttcaat
cagcagcgccccgactggcagcgcctggccgccgcccaggcagttcggcgtcggctggcc
gtaatctccggcggtcccggcaccggcaagaccaccaccgtggtgcgcctgctggcggcg
ctgctcgagcagcccggcggcgagcgcctggccatcggcctcgctgcacccaccggcaag
gccgcggcacgcatggccgaggcgatccgcaacgccaaggccgagctgccggtcagcgat
gcggtgaaggaggccctgccggacgaggcgcggaccctgcaccgcctgctcggcagccgc
ggcgacagcccccgagtgcgccacgatgcggccaatccgctggcgttggacgtgctggtg
gtggacgaggcgtcgatggtcgacctggcgctgatggccaaactggtcgtcgcgctgcca
ccgaaggcgcggctgatcctgctcggcgacaaggatcagctggccgccgtggaggccggt
gcggtgttcgccgaactctgcgaaggccgtggcttcgatgccggggcggcaagcgagctg
gagcgcatcaccggccagcccgtgccggtcgagacgccgcgctcgcgcctcggcgatgcg
gtggtgctgctcacccacagtcaccgcttcgccggcgacagcggcatcggcgagctggcg
cggcggatcaacgctggcgatgcgaaaggcaccgtcgcgctgctgcaggaaggtcgtgcg
gatctcgcctggaacgcgacgcccggcgcgaccgccttgatcgagcggctggagcagggt
tacggcggttacctgcaggctgcgcggcagggcgatccaggcccggcgttcgaggccttc
aacggtttccgggcgctgactgcgcaacgcgagggcccgttcggcgtgaccggtatcaac
gaggcgctggaaacacgcttcaggcgtcgcctcggcgtgccggcccgcgaacgctggtat
cccggccgtgcggtgatggtccggcagaacgactacgcgctggggctgttcaacggcgat
atcggcctgtgcctgaaaaccgagcagggcctgcgggtgttcttcgagggtgacaacggt
taccgcggcttcgcgccggcacggctgccgagccacgacagcgccttcgccatgaccgtg
cacaagagccagggctcggaattcaccgaggtgctgctggccttgccggatcagccgagc
ccgctgctgacgcgcgcgctgttctacaccggcataacccgcgccaagcgccgggtggag
atctgggcgctgccggcgcggctggctgaagcggtcagcacccgcgccgagcgcgccgcc
gggctggccgagcggctggttctggcgggcgccgtggccgatgccgatgcggtgccggaa
gccccgatcggtgcggcgccagccgagggcgatcagctcagcctgttctaa
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