Paenibacillus terrae: HPL003_05065
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Entry
HPL003_05065 CDS
T01668
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pta
Paenibacillus terrae
Pathway
pta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPL003_05065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pta03019
]
HPL003_05065
03009 Ribosome biogenesis [BR:
pta03009
]
HPL003_05065
Enzymes [BR:
pta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPL003_05065
Messenger RNA biogenesis [BR:
pta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPL003_05065
Ribosome biogenesis [BR:
pta03009
]
Prokaryotic type
rRNA helicases
HPL003_05065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Flavi_DEAD
Rab11-FIP3
SPAM
Motif
Other DBs
NCBI-ProteinID:
AET57780
UniProt:
G7VWW1
LinkDB
All DBs
Position
complement(1066790..1068415)
Genome browser
AA seq
541 aa
AA seq
DB search
MKNFAALGVEQHWVDALKEQGITAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPI
LQKMNLDKRHPQALVIAPTRELALQITQEANILAATEPSLSLLAVYGGQDVERQLRKLKG
GAQLIIGTPGRLLDHLRRGTLDLSGVKMLVLDEADQMLHMGFLNDVETILQEVPYRRQTM
LFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDMLNAD
RPYLAVIFCRTKRRAAALNEQLQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLVATD
VAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQKV
AGVTFTSSEGGGQRRPAASTAERQDGERRSGRNDRRSFGGNGSGGGRRGSGREQAGRRDG
AGRGRTEREQPREGRAASAGGERRSSRSSERGGYDRSSGGSARGGQGRSAGQSSGRGGYD
RSSGGSARGGQGRSAGQSSERGGYDRNSGGSARGGQGGRGGQAKGGPRGAQGQGGRRGRS
R
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaattttgcagcattaggcgtagagcaacattgggtagacgccttgaaagagcag
ggaattacagcaccaacacctgtacaacaggaatcgattccgctgttgatggaaggtcag
gacgttattgccgaggcgcatacgggaacaggtaagacgcttgcgtttttactgccgatt
ttgcaaaaaatgaatctggacaagcgccatccgcaggcgctcgtgattgctccaacgcgt
gagctggcgctccagattacacaggaagcgaacatattggcggctacggagccaagcttg
tcgttgctggctgtttacggaggacaggatgtagagcgtcagcttcgcaagctgaagggc
ggcgcacagttgattatcggtacacctggacgactgctggatcacctgagacgcggcacg
ctggatctgagcggtgttaaaatgctggtgctggatgaagccgaccaaatgctgcacatg
ggctttctgaacgatgtagagacgattcttcaggaagttccgtaccggagacagacgatg
ctgttctccgctacgatgccagcaggtatccgcaaactggctcgtgtatatatgaacgaa
cctgtggatgtaaaagtgaagtctgcttcttctgttccggtgagtcaaatccgtcaggtc
gttgtacagacgacggatcggggcaagcagcaggcattggtagatatgctgaatgcggat
cgtccgtatttggctgttattttctgccgtacgaagcgccgtgctgctgcgttaaatgag
cagttgcaagaaatgggcttcgagagcggcgagcttcacggagatttgtcccagaacaag
cgtgagcaagtgatgaaggcgttccgtgaagcgaagcttcaattgcttgtagcgaccgat
gtagccgcacgcggcctggatgtggaaggtgtaacgcatgtcttcaactatgacatgcca
caggatgccgaaagctacattcaccgcatcgggcgtactggccgtgccggaggcaaaggt
gtggcggtaacgctcgccacgccacgggatgttccagagcttcggaacatccagaaggtt
gctggtgtcacattcaccagcagcgagggcggtgggcagcgtagacctgctgccagtacg
gctgagcggcaggatggagaacgccgctcaggcagaaacgaccgccgttccttcggcggc
aacggttccggcggcggacgccggggcagcggccgtgaacaggcgggccgtcgtgacggc
gcaggccgtggccgcacagagcgagaacagccgcgcgaagggcgcgcagcttccgcaggc
ggcgaacgtcgctccagccgcagcagcgaacgcggcgggtatgaccgcagcagcggcggt
tccgctcgcggaggtcaaggccgttcggcagggcaaagcagcggacgcggcgggtatgac
cgcagcagcggcggctccgctcgcggaggccaaggccgttccgcagggcaaagcagcgaa
cgcggcggatatgaccgcaacagtggcggctccgctcgcggaggccaaggtggtcgcggt
ggacaggccaaaggtggaccacgcggggctcaaggacagggaggccgtcgcggacggtcc
agataa
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