Paenibacillus terrae: HPL003_08135
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Entry
HPL003_08135 CDS
T01668
Name
(GenBank) metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pta
Paenibacillus terrae
Brite
KEGG Orthology (KO) [BR:
pta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HPL003_08135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pta03021
]
HPL003_08135
03019 Messenger RNA biogenesis [BR:
pta03019
]
HPL003_08135
Transcription machinery [BR:
pta03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
HPL003_08135
Messenger RNA biogenesis [BR:
pta03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
HPL003_08135
U7-dependent histone pre-mRNA processing factors
HPL003_08135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B
Lactamase_B_2
Lactamase_B_3
Lactamase_B_6
Anti-Pycsar_Apyc1
RMMBL
Gp49
DUF6289
Motif
Other DBs
NCBI-ProteinID:
AET58390
UniProt:
G7VX12
LinkDB
All DBs
Position
1741440..1742849
Genome browser
AA seq
469 aa
AA seq
DB search
MMTKLRIWGGAGEHGRSCYVFEGKQHRVMLDCGVKKEGTGQYPVFPPQEAERLTAVLLSH
AHEDHSMAIPLLYKNGYRGEVWTTKATAEQLGSYFRSWHTYVESRGGKLPYDERDIESIA
YRYLEDEAPSGVWQEACPGVRIMWGRSGHLAGAVWYMVEIEGKRLFFSGDYSRESELLAA
DAPGLAVRGGVHDLPEWMMEPELADISIMDNAYGMDIDPQPVKLERLRAGMEQILSSGGH
VLLPVPAFGRGQDLIVWASEQFPEQAMIVEPDIWQGLQRLSRLKEWLRPEAPVRIEHVLH
SGRIFVPRDAAERVRLLEQNAAAVIVTGDGMMDSPRARWYYQYLSDHPPSAGDGEGSGKS
NHNGVILTGHASSGSFGKHLLDCTNQKTGQKTDQNDCCIVRHLIYKVHQGVSDVRQMLKE
LPGKQVVLVHAPKPQTDLVRDELIREGWTEHESSVKAIHSLEPGAALNV
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccaagcttcgaatttggggcggagcgggcgaacatggccgctcctgctatgtt
tttgaaggaaagcagcatcgcgtcatgctggattgtggtgtgaaaaaggaaggaaccggg
cagtatccggtttttccgccgcaggaggcggagaggctgactgctgtattgctgtctcat
gcacatgaggatcattcaatggcgatccccttactgtacaaaaatggataccggggagag
gtctggacgacaaaggccactgcggaacagttgggttcctattttcgctcctggcatact
tatgtagaatcgagaggcggcaaattgccatacgacgaacgagatatcgaatccatcgct
taccgttatctggaggatgaagcgccgtcaggggtgtggcaggaggcttgtccgggtgta
cggatcatgtggggacgcagtggacatttggctggcgcagtgtggtacatggtagaaata
gaagggaagcggttattcttttcgggagactacagccgcgaatctgagctgctcgcagcc
gacgcaccgggcttggccgttaggggaggtgtgcatgacctgcctgaatggatgatggaa
cccgagttagcggatatctccattatggataatgcctatggcatggatatagacccgcag
cctgtgaagctggagcggctgcgggccggaatggagcagatattgtcttctggtggtcac
gtgctgcttccggtacccgcctttggccggggacaggatttgatcgtgtgggccagcgag
cagttccctgaacaagcaatgattgtagagccggacatatggcagggattacagcgtttg
agccgtttgaaagaatggctgcgcccggaagcacctgtgcggatagaacatgtgctgcac
agtggcaggatctttgtgcctcgtgatgctgcggagcgagtacggctgctggaacagaat
gctgcggctgtgatcgtaaccggggatggcatgatggattcgccccgggcgcgctggtac
tatcagtatttatcagatcatccgccgagtgcgggagatggcgaaggtagcggaaaaagt
aatcataacggtgttattttgacgggacatgcttcaagcggttcctttggtaaacatctg
ctggattgtacgaatcaaaaaacgggtcagaaaacagaccaaaatgactgttgtatagtt
cggcatttgatttacaaggtgcatcagggggtatcggatgtgaggcaaatgttgaaggag
ttgcctggtaaacaggttgtgctcgttcatgcgcccaagccgcagaccgatcttgtgcgt
gacgagttgataagagaaggctggaccgaacacgaaagctctgtaaaagccattcactct
ttggagccgggcgcagcgttaaacgtttag
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