Paenibacillus terrae: HPL003_15105
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Entry
HPL003_15105 CDS
T01668
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pta
Paenibacillus terrae
Pathway
pta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPL003_15105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pta03019
]
HPL003_15105
03400 DNA repair and recombination proteins [BR:
pta03400
]
HPL003_15105
Enzymes [BR:
pta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPL003_15105
Messenger RNA biogenesis [BR:
pta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPL003_15105
DNA repair and recombination proteins [BR:
pta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPL003_15105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AET59772
UniProt:
G7W4D4
LinkDB
All DBs
Position
3244133..3246031
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AA seq
632 aa
AA seq
DB search
MSVQAPTLERAQDLLQKFYGYPDFREGQKKIVASMLEGNDTLGIMPTGGGKSICYQIPAL
LHDGLTIVVSPLISLMKDQVDALTTMGIAAAYINSTLSGREVNDRIRAARNGDLKLLYVA
PERLELDWFRDEMAQLPISCVAVDEAHCVSQWGHDFRTSYLAVAPFVDGLYERPIVAAFT
ATATPQVMDDIVRLLRLREPETFVTGLGRPNLAFSVLRGEDKRSFLLNYAREHDGESGII
YAATRKDVDDLYQRLRDAGMAAGRYHAGMTDQERADSQEGFLYDDIRVIVATNAFGMGID
KSNVRYVIHYNMPKNMEAYVQEAGRAGRDGDPSQCILLFGPQDIVTQKFLIEQNPQDEER
KRNDYRKLQQMVDYCYTTRCLRTAQLEYFGEAEEHEACGTCSSCTDERELVDMTIDAQKI
FSCIHRMRERFGVSMVASVLKGSRNKKVLQYGFDSLPTYGVMGNRTEKEISEIINVLVSE
GYLLLSEGQYPVVRLQQPAAEVLKGQREVMQRVVRHATAFAGGTGSRGRQGRDAYPAAVN
ETVFEQLRLIRRDLAAQEHVPSYIIFNDATLREMSVANPQSEADMLRIKGVGEVKFRKYG
KLFLDFFQNQGNAVGAVNEDEIYADDVYEDFE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtacaagcaccaacattggaacgggcgcaggatttactgcaaaaattttatggc
tatcccgatttccgggagggtcaaaagaaaattgtcgccagtatgctggagggcaacgat
acgttaggcattatgccgacaggtggcgggaaatccatatgctaccagattcccgcactg
ctgcatgatggactgacgattgttgtgtcaccgctgatctcactgatgaaggatcaggtg
gatgcgctgaccacgatgggaattgcggctgcctatatcaatagtacgctgagtggccga
gaagtgaacgaccgcatacgtgccgcacggaatggagatttgaagcttctatatgttgca
ccggaacggctggaactggactggttccgcgatgagatggcgcagctaccgatttcctgc
gttgcggtcgacgaggcgcactgcgtatcccagtggggacatgactttcgcaccagttat
ttggcggtggctccttttgtggacgggctatacgagcgcccgattgtagcggcattcacg
gcaacggcgacaccgcaggtcatggacgacatcgtgcggctgcttcgtctgcgtgaaccg
gagacattcgtcacgggactgggacggccgaatttggcgttcagcgtgctgcgtggggag
gacaagcgcagctttctgctgaattatgcgcgtgagcatgacggcgaatcgggcattatt
tatgcggcgacacgcaaggacgtggacgatctgtaccaacggctgcgggatgcgggaatg
gcggctgggcgttatcatgccgggatgaccgatcaggaacgggcagacagccaggagggc
ttcctgtacgacgacattcgtgtcattgtagcgaccaacgccttcggcatggggatcgac
aaatcgaacgtgcgctacgtcattcactacaatatgcctaaaaatatggaggcttacgta
caagaggcgggacgcgcaggacgtgacggtgatccgagtcaatgtattttgctgttcgga
ccgcaggatattgtgacccagaaattcctgatcgagcaaaatccacaggatgaggagcgc
aagcgcaacgactaccgtaagctccagcagatggttgattattgctatacgactcgctgc
ttgcgtacggcgcagcttgagtattttggtgaggcagaggagcatgaagcttgcggcaca
tgcagctcatgtacggatgaacgggaactggtggacatgaccattgatgcgcaaaagatt
ttttcgtgtattcatcgcatgcgggaacgttttggtgtttcaatggtagcctcggtattg
aaaggctcgcgtaacaaaaaagtgctacagtatggctttgacagcctgccaacctatggt
gtaatgggcaatcggacggaaaaagaaatttctgaaattattaacgtccttgtatcggaa
ggctatctgctgctgtctgagggacaatatccggttgtccgtttgcagcagcctgcggca
gaagtgctgaaaggtcagcgcgaagtcatgcagcgtgtggtgcgacatgccactgctttt
gcaggtgggacgggctcgcgtggacgacagggacgcgatgcgtatccagcggcagtcaac
gaaacggtgttcgagcaactgcgcctgattcgccgcgatttggccgcacaggagcatgta
ccgtcctatatcatttttaacgatgctacgctgcgtgagatgagtgtagcgaacccgcaa
tctgaggcggacatgctgcggatcaagggtgtcggcgaagtgaagttccgcaagtacggc
aagctgttccttgatttttttcaaaatcaggggaatgccgtaggagcagtgaacgaagat
gaaatttatgcggacgatgtgtacgaggattttgaatag
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