Primulina tabacum: 142505226
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Entry
142505226 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142505226
03036 Chromosome and associated proteins [BR:
ptab03036
]
142505226
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
142505226
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
142505226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
HTH_44
Spt6_S1
HHH_3
Tex_central_region
HHH_9
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
142505226
NCBI-ProteinID:
XP_075474230
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All DBs
Position
10:5734196..5744642
Genome browser
AA seq
2188 aa
AA seq
DB search
MAGRKAVSADDDATGFQNEGDDGLYEDLAEDDDEDDDGLDAYERDGFIVDDVDEEDEEDN
CGERQKKKKKKKREAERSYLLDEDDYELLQESNISVPRPNLQNKKLKRLKKAQGDTKEES
SQFSGERQHNGSEKGWRTAEERLKYRLFGDDDGQSLEDMDEEDEQQEKQDIDIAEEDEMA
DFIVDEDQVDERGAPIWRKKQPRSMQQSGIPSSALQEAHEIFGDVEDLLKIRKLEAVDTF
GEAGERSLEDQFDPSVLSEKYMTGRDEQIRKIDIPERIQIYEESTGLSPLDEISIEVESE
WIYSQLVSGAVPFYSKSADATEGSDELKGHIAKYLELLHVQKLDVPFIAMYRKEEILCLL
KDPDDPEADPIEKPKLKRHKVLWTIRDLDQKWLLLLKRKGTLQSYYAKRFKEEIRRVYDE
TKLNLNQQLFESIAMSLKAANSESEVDDVDSKFSLHFPPDEVVLDEGTYKRPKRKSHYSI
CSKAGLREVANRFGYSSEQFGLQISLEKMRMDELEDAKEAPEEMASNFICMMFETPQAVL
KGARHMAAVEISCEPSVRKHVRGIFMDNAVVSTSPTPDGNAAINSFHMFSGVKWLRDKPL
SRFEDAQWLLIQKAEEEKLLQVTIKLPEAVLDKLLSDSRDYYLSDGVSKSAQSWNEQRKK
ILHDAFHNILLPSMEKAARSWLTSRSKTWLLEEYGKLLWVKVSVAPYQRKENDISSNEET
APRVLACCWGPGKPATTFVMLDSSGEIEDVLNAGCLNLRGQSVNDLQRKKNDQQQVQKFM
MDHQPHVVVLGAANLSCTRLKDDIYEIIFKLVEDNPRDCQKIDSLNIVYGDESLPLLYEK
SRISVDQLPSQEGIIRRAVALGRYLQNPLAMAATLCGPGREILSWKLNPLEKFLTPDEKY
GMVEQVMIDATNQVGLDINLASSHEWLFSPLQFISGLGPRKAASLQRSLVRAGAIFTRKD
LLTSHGLGKKVFINAVGFLRVRRSGLSSSSSQFIDLLDNTRIHPESYSLAQDFAKDVYSE
SMNNEVNDDDDDDLLEIAIEHVRENPHLLTAVDVHEYAEQKKRQNKKETLNDIRLELMEG
FQDRRKSHVEPNQDDEFYMIAGEAEETLAEGRIVQATVRRVQEDRAICNLDSGLTGILSK
EDYTDDWRDINELTDKLHEGDILTCRIKSIQKNRYQVFLTSRESAMRSYRFQNDQIVDPY
FHEERITLQPKQEIAHKEEFSKKLFKPRMIVHPQFKNITADEAFEFLRDKEDGESVVRPS
LRGPSYLTLTLKVCDGVFANKDIVEGQKELKDITSLLQIGKKLKIGEDTFEDLDEVMDRY
VDPLIAHLKTMLNYRKFRKGTKTDIDELLRIEKAKIPTKIVYCLGLSYDHPGTFILTYIR
SVNPHHEYIGLYPKGFKFRKRMFGDVDRLVAYFQTHIDDPQSSVPTIQSAAAMVPIRSFG
SGDDWGGSNNDGDWGGSQSMDGDKTFGMGSRGGRGDSQSGGRGRGRGRGRGRGCGRGCDS
YGDGRPDKHDFDRDSQKWGSNNDKGVDWGGGASGSAGGWGGGDGSGNSGSWSGVGGGSKG
DGNCIDGGSGNTGGWGGGGSGNTGGWGVAGGGIKNDSNWGGGGSGGAGGLGGGGDRTESA
GGWGGGGRGGDRSRSAGGQGGGDDNGNNGGWGGAGGGSKKDSNWGGGGSGGAVGWGGGGG
DQSGSVGGGNKSDGNWDGGRCGDAGGWGGVGGGGRGGAGGWGGGRGGNQRGSAGNCEIGG
DGSKTDGNWGGCRSGDTKGWGKGESGTTRVGGDGGGGQSGSTGGWGGGSTGHGGSGKTGG
WGGGGRDNADGGRGASGGSGGEVGGSGGAGTWGGGGNDSDGGGSANAGAWGGSGGGSGSA
GAWGDAGGTSADGGNVRPGGWGGGSNNKSTGGTGEGIGSGSTGGWGGVGSHKSAGGGDRG
SGWGSGGDGGSTDGWKGSGHDDAGRDWGGSHSALGGTKGGGAGWGGGRASSAGGRYGRSG
CTGGGRGGSSSRSTGGRAGGTGRGSTSGWGGGGGSTGGWKGVGQENTGTGWGGSHGASGG
SKGGGAGWGGGHGSSCGDGGGSGGGQSGVAGAWGGSGSANDGGWGSGSGGTGAWAVGGSS
NAGGGNESTGGWGGGRGGGTGSGSTGGWGSGCGSETTDGGGGNAGGWGVSGTKKEGGGGW
GQGSDAAGNSGWGSSSSKKSSEAGKGGW
NT seq
6567 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcagaaaagcggtctccgctgatgacgacgctactggatttcagaacgaggga
gatgatgggctgtacgaagatctagctgaggatgacgatgaagatgacgacggactggat
gcttatgagagagatgggtttattgtggatgatgtggacgaggaagatgaagaggacaac
tgtggtgagaggcaaaagaagaagaaaaaaaagaaaagggaagctgagaggagttatttg
ctcgacgaggatgattatgaactactccaggaaagcaacatttctgttcctcgtccaaac
cttcagaataagaagcttaagcgactaaagaaggctcagggggatacaaaagaagagtca
tctcagttttctggtgaacgtcagcataatggaagtgaaaaggggtggcgaacagccgag
gagagacttaaatacagattgtttggtgatgatgatggacaatcgcttgaggacatggac
gaagaggacgaacagcaggaaaaacaggacatagatattgctgaagaggatgaaatggct
gattttattgtcgatgaagaccaagtagatgagcgtggagctcctatatggaggaagaag
caaccaaggagcatgcaacaatcaggaattccatcatccgctctccaagaagctcatgaa
atatttggcgatgtggaagaccttttgaagattcgcaagttggaagcggtggatacattt
ggtgaagctggtgagaggagcctcgaagatcagtttgatccaagtgtactttctgagaag
tacatgacaggaagggatgaacagattcggaaaatagacattcccgagaggattcagata
tacgaggaaagtaccggtctctccccattggatgagattagtatcgaagtggagagcgag
tggatatatagtcaacttgtcagtggtgcagttcctttctatagtaagagtgcagatgcg
acggaaggatcagacgaactcaagggccatattgccaaatatctagaattactacatgtt
cagaagttagatgttccattcattgcgatgtacaggaaggaggagatcctgtgcctatta
aaggatccagacgatcctgaagctgatcctatcgagaaacctaagctgaaacggcacaag
gtgctctggacaatccgggacctggatcagaagtggctgcttcttctgaaaagaaagggt
acactccagtcatactacgcaaaacgtttcaaagaagaaattcgaagagtatatgatgag
acaaaactgaatttaaatcaacaactctttgaatcaattgccatgtcactcaaggcggca
aattcagaaagtgaggttgatgatgttgactcaaaatttagtttacatttccccccagac
gaagttgtcttagatgaaggtacgtataaaagaccgaaaagaaagtcacattacagcatt
tgcagtaaagctggcctacgggaggtagcaaataggttcggttatagctctgagcaattt
ggattgcagatttctctggagaaaatgaggatggatgagttggaggatgcaaaggaggca
ccagaggaaatggcttctaattttatatgtatgatgtttgagacgcctcaagctgtgctg
aaaggcgctaggcacatggctgctgtggagataagctgtgaaccttcagtccggaaacat
gtacgcggtatctttatggataatgcagtggtgtcaactagtcctacacctgatggaaat
gcagccataaattcatttcacatgttttctggagtgaagtggttacgggacaagccgctt
agcagatttgaggatgcgcagtggctgctgattcaaaaggctgaagaggagaagctttta
caggtcaccatcaagttaccagaagcagttcttgataagttattaagtgactcaagggat
tattatctgagtgatggtgtaagcaaatctgctcaatcatggaacgagcagaggaagaag
atacttcatgatgcatttcacaatattcttctaccatcaatggagaaagcagcaagatcc
tggttgactagtagatcaaaaacctggttgcttgaagaatatggaaaattattgtgggtt
aaagtgtctgtggcaccatatcagcggaaagaaaatgatatcagttcaaatgaagaaact
gcacccagggttttggcttgctgttggggccccggaaagccagctacaacttttgtgatg
ttggattcatcgggagaaattgaagatgtgttgaatgctggatgccttaatcttcgtggt
caaagtgtaaatgatctgcaacgtaagaaaaatgatcaacaacaagtgcagaaatttatg
atggaccaccaaccccatgttgttgttctaggagcagctaatttgtcttgtactcggctg
aaggatgatatttatgagataattttcaagctggtggaggataatccaagagactgtcaa
aaaatcgatagtctgaatattgtttatggtgatgaatctcttcctctcctgtatgaaaaa
tcccgtatatcagtcgatcagctcccttctcaagaaggtattattcggcgtgctgtggct
cttggacgttatcttcagaatccattagctatggctgcaactttatgtggaccgggtagg
gagatattatcctggaaacttaatcccctggagaaatttctcactcctgatgagaagtat
gggatggttgaacaagttatgatagatgcaacaaaccaagtgggtcttgatattaacttg
gcttcaagtcatgaatggttattttctcccttgcagttcatttctgggcttggacccaga
aaagcagcttctctgcaaaggtccctagtaagagctggggccattttcactaggaaagac
ctgttgacatctcatggtcttggtaaaaaggtttttatcaatgctgttggatttctgcga
gtccggcgaagcggactgagttctagcagtagtcaatttatcgatttgttagacaacaca
agaatacatccagaatcctacagccttgcccaagattttgcaaaggatgtttactctgaa
tccatgaataacgaagtgaatgatgacgacgacgatgatttgctagaaattgctattgag
catgttagagagaatcctcatttgttgacggctgtggatgttcacgaatatgccgagcag
aaaaaacgtcagaacaaaaaagagacccttaatgatataagattggagttgatggaaggg
tttcaggatcggcgcaaatcacatgtagaacctaatcaagatgatgaattttacatgatt
gctggagaggcggaagaaactctggctgaaggaagaattgttcaagcaacagttcgcagg
gttcaagaagatagagctatttgcaaccttgattctggactgacaggcatacttagtaag
gaagattacactgatgattggagggatatcaatgaattgactgataaactgcacgagggc
gatattttaacctgcaggatcaaatccattcagaagaaccgctatcaagtatttttaact
tctagagaaagtgcaatgaggagctaccgtttccagaatgatcagattgtggatccatac
tttcacgaagagcgcattaccttacagcccaagcaggaaatagctcataaagaggagttt
tcaaagaaactttttaagccaaggatgattgttcacccgcagttcaaaaatattacagct
gatgaagcttttgagtttctccgggacaaagaagatggtgaaagtgttgttcgtcccagt
ttacgcgggccttcatatttgactttaacgctgaaagtttgtgatggggtttttgctaac
aaggacatagttgaaggtcaaaaggaactcaaggacatcacaagcttgctccaaatcgga
aagaaattgaaaattggagaagatacatttgaggatcttgatgaggtaatggatcgatac
gtggacccattaatagctcatttgaagacaatgttaaattataggaaatttaggaagggc
actaaaactgatattgacgagctccttagaatcgaaaaagctaagattccaacaaaaatt
gtgtattgccttgggttatcttatgaccatcctggcacatttatcctgacttacataaga
agtgtgaatccacatcatgagtacattggtctctatccaaagggatttaagttccgtaaa
cgaatgttcggggacgtggaccgtcttgttgcatattttcagacacacattgatgatcca
cagagttctgttccaacaattcaatcagctgctgctatggtgccaatcagaagttttggt
tctggtgatgactggggtggttcaaacaatgacggtgattggggtggaagccaatctatg
gatggagataaaacttttggaatgggttctagaggaggtagaggtgactctcaaagtggc
ggtcgcgggcgcgggcgtggtcgcgggcgcggtaggggatgcggacggggttgtgactcc
tatggtgatggcaggcctgacaaacatgactttgatcgtgactcgcaaaagtggggttct
aacaatgacaaaggtgttgattggggaggtggggcaagtggaagcgccggtggttggggt
ggtggtgatggcagtggaaattctggtagttggagtggtgttggaggtggaagtaaaggt
gatggtaattgcatagatggcggcagtggaaatactggtggttggggtggcggcggcagt
ggaaatactggtggttggggtgttgctggaggtggaattaaaaatgacagtaattgggga
ggtgggggaagtggaggtgctggtggtttgggtggaggaggtgaccgaactgaaagtgct
ggtggttggggcggtggtggcagaggaggtgacagaagcagaagtgctggtggtcagggt
ggtggtgatgacaatggaaataatggcggttggggtggtgccggaggtggaagtaaaaaa
gacagtaattggggaggtggtggaagtggaggtgctgttggttggggtggcggaggaggt
gaccaaagtggaagcgtcggtggtggaaacaaaagtgatggcaattgggatggtggcaga
tgtggagatgccggtggttggggtggtgttggaggtggtggacgtggaggtgctggtggt
tggggtggcggcagaggaggtaaccaaaggggaagcgctggtaattgtgaaatcggaggc
gatggaagtaaaactgatggcaattggggtggttgcagaagtggagacaccaagggttgg
ggtaagggcgaaagtggaaccactagagttggtggtgatggaggaggtggccaaagtgga
agcactggtggttggggaggtggtagcactggtcatggtggcagtggaaaaactggtggc
tggggaggaggtggacgtgacaatgctgatggtggtcgtggtgcttcaggtggtagtggg
ggtgaagttggtggaagtggaggggctggtacctggggaggtggtggaaatgacagcgat
ggtggtggcagtgcaaatgctggtgcctggggtggtagcggaggtggaagtggaagtgct
ggtgcttggggagatgctggtgggacaagtgctgatggcggaaatgtaaggcctggtggt
tggggcggtggcagtaacaataaaagtactggtggcacgggtgaaggtattggaagtgga
agcaccggtggttggggtggtgttggtagccataaaagtgctggtggtggagatagaggt
agtggttggggaagtggtggtgacggaggaagcactgatggttggaaaggtagtggacat
gacgatgctggtcgtgattggggtggcagccatagtgctttagggggtaccaaaggtgga
ggtgctggttggggtggcggccgtgcttcttcagctggtggcagatatggtcgaagtgga
tgcactggtggtgggcgtggtggcagtagcagcagaagcactggtggcagggctggaggt
actggacgtggaagcaccagtggttggggtggtggcggaggaagcactggtgggtggaaa
ggagttggacaagagaatactggtactggttggggtggtagccatggtgcttcaggtggt
agcaaaggtggaggtgctggttggggtggcggccatggttcttcatgtggagatggaggt
ggaagtggaggtggtcaaagtggagttgctggtgcctggggaggcagcggtagtgcaaat
gatggtggctggggtagcggaagtggaggcactggtgcttgggcagttggcggtagttca
aatgctggcggtggcaacgaaagtactggtggttggggtggtggcaggggtggaggtaca
ggaagtggaagcactggtggctggggtagtggttgtggcagtgaaaccaccgacggtggt
ggtggaaatgccggtggctggggagtcagcggtactaagaaagaaggtggaggtgggtgg
gggcagggaagtgatgcagcaggtaattcaggatggggcagtagcagcagcaagaagagc
tcagaagctggtaaaggaggctggtga
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integrated database retrieval system
