Primulina tabacum: 142505477
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Entry
142505477 CDS
T11246
Name
(RefSeq) THO complex subunit 4C-like isoform X1
KO
K12881
THO complex subunit 4
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
ptab03015
mRNA surveillance pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142505477
09122 Translation
03013 Nucleocytoplasmic transport
142505477
03015 mRNA surveillance pathway
142505477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142505477
03041 Spliceosome [BR:
ptab03041
]
142505477
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142505477
TREX complex
142505477
Spliceosome [BR:
ptab03041
]
Complex C
Other components
EJC/TREX
142505477
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142505477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_9
RRM_3
Motif
Other DBs
NCBI-GeneID:
142505477
NCBI-ProteinID:
XP_075474576
LinkDB
All DBs
Position
10:complement(1093749..1097414)
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AA seq
277 aa
AA seq
DB search
MASLDMSLDDMIKIRKNSERNRGQASSRGSRRGRGPGGSSSRGGGRTYGPPRRGPLGLNT
RPSAQMIAKTFRRTKNLLWRNGLLEDSLKAAGLSGLVNGTKLYVSNLDIGVTIEDIRDLF
SEIGELMHYAVHYDKNGRPSGSAEVIFVRRSDAFQALKRYNNVQLDGKPMKVEIIGDDAE
IPVSARLNIFGKAIGKRTVVMGPGTGRFGGGSRVDKNNRGPMGLGGSNFGHGGGRGGGRG
RGRGRGSGVARGRKIEEKSADELDKELDHYHAEAMQS
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcctccttggatatgtcgttggatgatatgattaaaatccgcaaaaatagtgagcgt
aacagaggacaagccagctcaagaggctcacgaaggggacgagggccaggagggtcatca
tcccggggtggcggcagaacatatggacctcctcggagaggtccacttggacttaatact
cgaccgtcagctcaaatgattgccaagaccttccgcagaaccaagaatttgctgtggcgg
aatggtctcctcgaggatagtctaaaagctgctgggttatctggattagtaaatggtaca
aagttgtacgtttccaacttggacattggagtcactattgaagatataagggatctattt
tctgagattggagagctgatgcattatgcagttcactatgacaaaaatggacgcccaagt
ggttcggctgaagtgatatttgtccggaggagtgatgcatttcaagcgcttaagcgatat
aacaatgtccaattggatgggaagcccatgaaggtcgagataattggtgatgatgctgag
atccctgtttctgctcgtttgaacatttttggaaaagctattggaaaaagaactgttgta
atggggcctggaactggtcgtttcgggggtggctccagggtggataagaataaccgggga
cccatgggtcttggtggttcaaattttggtcatggaggtggacgtggtggtggaagaggc
cgtggtcgcggccgaggcagtggtgtagctcgtgggagaaagattgaggagaaatctgca
gatgaacttgacaaggagctggaccactatcacgctgaagctatgcagagttga
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