Primulina tabacum: 142505558
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Entry
142505558 CDS
T11246
Name
(RefSeq) uncharacterized protein LOC142505558 isoform X1
KO
K24155
rabconnectin-3a
Organism
ptab Primulina tabacum
Pathway
ptab04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
142505558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptab04131
]
142505558
Membrane trafficking [BR:
ptab04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
142505558
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
142505558
RAVE complex
142505558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_EML
WDR55
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_TEP1_C
EIF3I
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
142505558
NCBI-ProteinID:
XP_075474705
LinkDB
All DBs
Position
10:2393833..2409761
Genome browser
AA seq
2542 aa
AA seq
DB search
MEHHQSFHPSSSQISSAGKMPEVTSKSPAAADIASYLPLKLIKSEIVPPAPSRPKHGSEH
VIDWLLDFDGYSWIVYGASSLLVISHFPNPLSQAEAKIGPVFRQVLELSRSRGSDVCVSA
VSWSPAEPCVGELGAAIDECIQLFSYNSDDTSSSSFCWSQTAVLSQTTKVEAIQWTGSGD
GIISVGIEVMFWRRNVKSWEIAWKFRPKVPQTLISTTWSLQGLSATAPYGLNNGVASSLT
NEARNYGSLANNSVLICQGDGLSKYMQAELHHPMPVGMIQWRPSTGKPLSRHVVHAPRSV
LLTCSFDGAVRLWSEIDAGRIRRSGKDSNDHRSPRLSFCVIGVIEVYQTLNGSLGSDIFV
FWATEVESIKLLYDEACYSRLNDSQYDDASSCEWLIGLGPDRATTLWAVHCLDDFAPVRF
PRITLWKKQELVSSEMETSQVLVRKVFMMRNLVSGPPVACSLVQLSPCNSFTWIQLYFQR
PTREGKSANGYNTENPTPSQSKGIMKADGHTGKILQIAVHPSISGFELAASLDRHGMLLF
WSFSIFFSSHIGLPTSTPSWKLYGKISFSGCSHSPNYTCLCWAPAILSEDRALLLGHSDG
IDCFILQTSKGDEHNLSFHKLCSISFWACGHQQRVSRICSIPLPPDCDETVSSCKFLLVA
LWMDRFQALSWEITIHYNGSCRCCCDDRLQIFESDFAGKKYIVSVEPCSSVIPAPHDDDQ
VTSYSVACPNDLIVSLEQKLSSDNGRGGRCYAYHMITGCMNGSLKLWRSLPTRSSSSGAN
WDLVGVLSSGQGSITALTPSPCCRKIATASPSDQQNCSSILCIWECMHVQNAGIFLLEDK
LCLDGEVVALSWLMMGNGQLLLGVCLQSEVRVYALRRCGHQNFLKSGKPMEKNIWHCIAV
HSASPAIHNFLWGPRGTIIVVHDKYFSIFSQFLLLADEDFLSKCCPKFCQDGPFCCNGGI
RKLMLSTTFTDSKEPSMKINGQYQLSSEVNMRDDPKSYVQDCEQMHNILTKIWFWSMSEI
AENMGGSLPLYHPETLLINISSGNFKRAFVALRHLVKDIASNGSSKKRYGTKVPHNMISP
LPMSNYLEGLPTSSSNDNLFQWSSSQPQIGLSQFTSGWGHNDPHIGLTSSSQRSEFVGFI
EALDWLHRAGCMTNIEMMQAISLVDLLQEVSDPHSTSAYGSLDEPGRRFWVAVRFQRLFF
SRRFNRLPLVEELDVSSELIGWAFHSDCHENLFNSLLSAEPSWEEMRSIGVGFWYSNVTQ
LRLKMERLARQQYMRNKDPKACSLLYIALNRIQVLAGLFRISKDDKDKPLATFLLRNFQE
DNNKAAALKNAYVLMGKHQLELAVAFFLLGGDLSSAVSVCAKNLGDEQLALVICRLIEGY
CGPSERNLISKFLLPSALSKDNNWMASFLEWVLGNHSQSFLRILGVEMSSESNSSILSSL
HAPFLDPSISQYCMMLATKTVMKNAIGEYRAAVLSQWAVLMNVTSLSRCGLPLEALECHS
SSISFFGSLGQGSTMQSPDHNVLVEMLKPPADKHFLNWISKETSHQIMSHSKLNLAMQYL
SNLLTEHPSSADIETASFGMFTNYNPVDQEFEKSLNEFHSNLTTAIACFQQKFFLIPLHL
IFMAALFFHHKGLEFIGNNILHEYMLKVQSDDKCHADNLFSHPIPSDLLLKATEEFSCIF
AKYVLFSCVNCNHSSYLDNGSIACEARFCWLAAWGFSNQGITWSFGCLTAMLRLILRPYT
KEFEMMLFHILALVKYHVFFSSAWLQRNLNALLVIVRPILTPLMRGNVSNELTVEDLNAL
LSEIVEKLTRESTYVQLPTCVEIDGRKQEQNVGSVPSAPEAKSWELMSGSLWVHMVKFLE
HQLNTLPVILDGICPSPTPSLSIPDCKNLPLEMGLVSSTLVEFLKLTKAGVSFYCSRQFV
VNLLQEVDLPNKLILSYLENGFPLPELGDKYNNKSLENTEFLDSGSELSALKKLWLICAD
RRITHGAFEQEYGNWLPYIKQKSFGGWGETYINISREYESEETSFKKDRLDSPTHAVGSP
LACLSPDDHPFKSFGGNDMFDMKKTMPFHNPKEIYKRNGELLEALCINSVDNCQGAVASN
RKGIMFFNWEDGLLHMDKSDSLWEEADWPHNGWAGSESTPVPTCVSPGVGLGSTKDTHLG
LGGATIGAAAVPRAGWDLTGGGAFGIPGYAGVGASGLGWGVQDGFDEFVDPPATVDNVRS
RALASHPSRPFFMVGSSNTHIYLWEFGEERAIATYGVLPAANVPPPYALASVSAVRFDNC
GHRFATAALDGTVCTWQLEVGGQSNIWPTESSACFSNHTSDVTYVTASGSIIAASGYSSN
GVNVVVWDTLAPPATSQASIMCHEGGARSLSVFDNDIGSGSISPLILTGGKEGDVGLHDF
RYIATGKTKRHKHFDTGEHNINASSSGYMQNKTGDQNRNGMLWYIPKAHSGSVTKITTIP
NTSFFLTGSKDGDVKLWDAKMAKLVFHWPRLHERHTFLQPSSRGFGGVVRAAVTDIQVVP
QGFLSCGGDGLVKFIRFHNFRT
NT seq
7629 nt
NT seq
+upstream
nt +downstream
nt
atggagcatcaccagtccttccatccaagctccagtcaaatctcgtccgccgggaaaatg
ccggaggttacttccaaatctcccgccgcggcggacatcgcctcgtatcttcctctcaaa
ttgatcaaatcggagatcgttcctcctgccccgtcccgtcccaaacacggatctgaacat
gtgatcgactggctgctggacttcgatggatactcatggattgtctatggggcttcatct
cttcttgtaatttctcacttcccgaatcctttgtcccaggccgaagcgaagatcggtcct
gttttccggcaagttctcgagctatcgagaagccgtggtagcgacgtttgcgtctcggcc
gtctcgtggtcgcctgcagaaccttgtgttggtgaacttggggcggctatagatgaatgt
atccagttgttctcatataattcagatgacacttcgagcagttctttttgttggagtcag
actgcagttctttctcaaacaacgaaggtggaggccatccaatggacggggtctggggat
ggaatcatttcagtaggtattgaagtgatgttctggagaaggaatgtgaaatcctgggaa
atagcttggaaatttagacccaaagtgcctcaaacgctgatatctaccacttggtcgctt
caaggattatcagcaacagcaccatatggactgaacaatggagttgcatcatctctgacc
aatgaagcaagaaattatggttctctggcaaacaattcggttttaatttgtcaaggtgat
ggactttccaaatatatgcaagctgagttgcatcatccaatgcctgttgggatgatacaa
tggaggccatcaacaggaaaaccattgagtagacatgttgtacatgcaccgaggtcagtg
cttctaacgtgcagtttcgatggcgctgttaggttatggagtgaaattgatgctgggagg
attagaagatctggaaaggatagtaatgaccatagatcaccgaggttgtctttttgtgtc
attggtgtgattgaggtttatcaaactcttaatggttctttgggctccgatatatttgta
ttttgggcaacggaagttgaaagcataaaactcctttatgatgaagcttgctattcacgt
ttaaatgattcacagtatgacgatgccagtagctgtgagtggttaattggcttgggtcct
gatagagcaacaactctatgggcggtacattgtcttgatgattttgctccagtgagattc
ccaaggattactttatggaagaaacaagagttagtcagttctgaaatggaaacaagtcaa
gtattagttcgcaaggtctttatgatgagaaatctggtttctggtccaccggttgcttgc
tccttggtccagttatcaccttgcaattcttttacctggatacaattatactttcaaaga
ccaactagagaaggtaaatctgccaatggatacaatactgagaatcctacgccgtctcaa
agtaaaggaattatgaaagctgacggccacactggaaaaattttgcaaattgcagttcac
ccgtccatttcaggttttgaactagccgcttccttagatagacatgggatgcttcttttt
tggtcattttcaatctttttcagtagtcacattggtttgccaacatcaactccctcttgg
aaactctatggaaaaatttcattttctggatgctctcattctcctaattacacttgcttg
tgttgggccccggctattttgagtgaggaccgagctcttctactggggcattctgatggt
attgactgctttatccttcagacttcaaaaggtgatgaacataatctttcttttcataag
ctatgttctatttcattttgggcttgtggtcaccaacaaagggtgagtagaatatgctcg
attcctttacctcctgattgcgatgaaactgttagctcttgtaagtttctgcttgttgca
ctatggatggatagatttcaggctctgtcgtgggaaataaccatacactataatggttca
tgccgatgctgttgtgatgaccgtttgcagatatttgaatctgattttgctggtaaaaaa
tacattgtctcagttgaaccatgctcctcagtcattcctgctcctcatgatgatgaccaa
gttacaagctattccgtggcctgccccaatgacttaattgtatctttggaacagaagcta
agttctgataatggaaggggcggccgctgctatgcttatcacatgataactggttgcatg
aatggcagtttaaagctatggaggagcttgccaactcgatcctcgagctctggtgcaaac
tgggatcttgtaggtgttctttcttcaggccaaggttcaatcacagcccttactcctagc
ccttgttgtcgaaagatagcaacagcttctccaagtgatcaacaaaattgctctagtata
ctttgtatatgggaatgcatgcatgtgcagaatgcaggtatcttccttctagaagataaa
ttatgtctcgatggagaggtcgttgcattaagttggttgatgatgggaaatggccagtta
ttattaggggtatgcttgcaatctgaagtgcgagtatatgcgctcagacgctgcggacat
cagaattttttgaaatctgggaaacccatggagaaaaacatttggcattgtatcgcagtg
catagtgctagccctgctattcacaacttcctctggggtcctagagggacaatcattgtt
gttcacgacaagtattttagcatttttagtcagtttttattgttagctgatgaggatttt
ctgtccaagtgttgcccaaagttctgccaggatggtcctttttgttgcaatggcggcatc
cgtaaactaatgctttcaacaacctttactgattcgaaagaaccatcaatgaagatcaat
ggacagtatcagttatcttctgaggtgaatatgagagatgatccaaagtcatatgttcaa
gactgtgaacaaatgcataacattttaactaagatttggttctggagcatgtcagaaata
gcagaaaatatgggaggatccctgcctttataccaccctgagacacttttgatcaatatc
tcttcaggtaacttcaaacgtgcatttgtagctttgcgtcatctggtcaaagacattgct
tccaatggatcgtctaaaaaaagatatggcactaaagtgccacacaatatgatttcacca
ctcccaatgtcaaattatcttgaagggctcccaacttcaagttcaaatgataatctattt
cagtggagtagttcacaaccacaaataggattatctcagtttacctctggttggggtcat
aatgatccccatattggattgacttcatcttctcaaagatctgaatttgtaggcttcatt
gaagctcttgattggttgcaccgtgctggatgcatgacaaatattgaaatgatgcaggct
atttcgttagtcgatctccttcaagaagttagtgatccacactccacctcggcttatgga
agtctagatgaacctggtagaaggttttgggttgcagttaggtttcaacgattatttttt
tcgcgaagattcaataggttgcctttggtggaagaactagatgtttcttcagaactgatt
ggatgggctttccattcagattgtcatgaaaatttgttcaactctcttttatcggctgag
ccatcgtgggaagaaatgcgcagtataggtgtagggttttggtactcgaatgtgacacaa
ttgcgtttgaagatggaacgactggctagacagcagtacatgagaaacaaagatcccaag
gcatgttcactcctgtacatagctttaaacaggattcaagttttggctggcctgttcaga
ataagcaaagacgataaagacaagccattggccacatttctgttgagaaattttcaggag
gataataataaggctgctgctctaaaaaatgcatatgtactaatgggaaagcatcagcta
gagcttgctgtagctttctttctgcttggaggggatctttcttcagctgttagtgtctgt
gctaaaaacctaggggatgagcagcttgctcttgtaatttgtcgccttattgagggttat
tgtgggccttcagagcgcaatcttatttcaaagtttctccttccatctgcactaagcaaa
gacaacaattggatggcaagttttctcgagtgggtgttggggaatcattcccagtccttt
ttgagaatacttggtgttgaaatgagttcagagtcaaatagctccattctttcgtctttg
catgcaccatttctggatccaagtatcagtcagtattgcatgatgttggctaccaagact
gtcatgaaaaatgctattggggagtaccgagctgctgtgttaagtcagtgggctgtactg
atgaatgtgacgtccttgagtagatgtggcctacctcttgaagctttggaatgccattcg
tcttctattagcttctttggcagtctagggcaagggagtacaatgcagagcccggatcac
aatgttcttgttgaaatgctgaaaccacccgcagataaacatttcttgaactggatatcc
aaagagacgtcacaccagattatgtcacattctaaactaaatttggctatgcagtacctg
tcaaacttgttgacagaacatccaagttctgcagatattgagactgcatcttttgggatg
ttcacgaactacaaccctgtggatcaagaatttgaaaagtcattgaacgaatttcacagc
aatttgactacagctattgcgtgttttcagcagaagttctttttgattcctcttcattta
attttcatggctgcgttgttttttcaccataaaggcctagagtttattggaaacaatata
ttgcatgaatatatgctgaaagttcaatctgatgacaagtgccatgctgacaacttgttc
tcgcatcctattccgtccgatcttctattgaaagccactgaggaattttcctgcattttt
gcaaaatatgttcttttctcttgtgtaaactgcaatcactcttcatatttggacaacggc
agcattgcttgtgaagccaggttttgttggcttgctgcttggggtttttctaaccaaggg
attacatggtcatttgggtgtttaacagccatgcttaggttgattcttagaccctacacc
aaagaatttgagatgatgctttttcatattctagctttggtcaagtaccatgtatttttt
tcatcagcttggcttcaaaggaatctcaatgctcttcttgttattgttagacctatttta
accccattaatgagagggaatgtgtctaatgagcttacagtagaggacctcaatgcactt
cttagtgagattgtggagaaacttactcgtgagtcaacttatgttcaattaccaacctgt
gttgagatagatggacgtaagcaagaacagaatgtaggaagtgtgccatcagctccagaa
gccaagagctgggagcttatgagtggttctctttgggtacacatggttaagtttttggaa
catcagcttaacacattgcccgtaattctcgatggtatatgcccttcccccaccccgtct
ttgtccatacccgattgcaaaaatttaccactggaaatgggattagtgtcaagtacttta
gttgaatttctaaagctcacgaaagcaggtgtttctttttattgttcgaggcaatttgtg
gtaaaccttcttcaggaagtcgacttaccaaacaaacttatcctctcatatttagaaaat
ggtttccctctgccagaactcggagataaatacaacaataaaagtctagaaaatacagaa
tttctggacagtggtagtgagctatcagctttgaagaaattatggcttatttgtgctgat
cgaagaataactcatggagcttttgagcaagaatatggcaattggctaccatatattaaa
caaaaatcttttggtggatggggcgaaacttatataaacatctcaagagagtatgaatct
gaggaaacttctttcaaaaaagatagacttgacagccctactcatgctgttggatcacct
cttgcttgtctgtccccagatgatcaccctttcaaaagttttgggggaaatgatatgttt
gacatgaagaaaactatgcctttccacaatcctaaagaaatatacaagagaaacggggaa
cttttagaggctttgtgcattaactctgttgataattgccaaggtgcagttgccagcaat
agaaagggaataatgtttttcaactgggaagatggattgcttcatatggataaatcagac
tctctctgggaggaagctgattggccacataatgggtgggccggatctgagtctaccccg
gttcccacatgtgtttctcctggcgtgggtttggggagtacgaaggacacacatctaggg
ttaggtggagctaccattggtgcagctgctgtgcctagagcaggctgggatttaactggt
ggtggagcgtttggaattcctggttatgctggtgtaggagcatctggccttggatggggg
gtccaagatggttttgatgagtttgtggatcctcctgcaactgttgacaatgtcaggtcc
agggcgttggcatctcatccttctaggcccttcttcatggttggctctagcaatactcac
atatacctgtgggagtttggtgaggaaagagctatcgctacatatggagttcttccagct
gcaaatgtccctcctccatatgctctcgcctcagtgtcagcagtgcggtttgacaactgt
gggcatcgatttgcaactgctgcattagacggcactgtatgcacatggcagcttgaagtt
ggagggcaaagcaatatctggccaacagaatcgtctgcctgctttagcaatcatacctcg
gatgttacttatgttactgccagtggatcaattattgcagcttctggatatagctccaat
ggtgttaatgtggtagtctgggacacactcgctcctcccgcgacttctcaagcttccatt
atgtgtcatgaaggtggtgctcgctctctctcagtgtttgacaatgacattggtagtggg
tctatttcacctctcattttgacgggcggaaaagaaggtgatgtgggccttcatgacttc
cgctacatagctactggaaagacaaagaggcacaagcacttcgacactggtgaacacaac
ataaatgcttcatcctcgggctatatgcagaacaaaaccggggatcagaataggaatgga
atgctctggtatataccaaaggcccactccgggagtgtaactaaaatcaccacgattcca
aataccagttttttcttaactggaagcaaggacggggatgtaaaactttgggatgccaag
atggccaagttggtgtttcattggccaagattgcatgaaaggcacacctttctgcaacca
agctcccgtggtttcggcggagttgttagggctgctgttacagatattcaggttgttcca
caaggttttctttcatgtggtggagatggtttagtaaaatttattaggtttcataatttc
cgcacatga
DBGET
integrated database retrieval system
