Primulina tabacum: 142505840
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Entry
142505840 CDS
T11246
Name
(RefSeq) DNA damage-binding protein 1a-like
KO
K12830
splicing factor 3B subunit 3
Organism
ptab Primulina tabacum
Pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142505840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142505840
03041 Spliceosome [BR:
ptab03041
]
142505840
03036 Chromosome and associated proteins [BR:
ptab03036
]
142505840
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
142505840
Spliceosome [BR:
ptab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
142505840
Complex B
142505840
Complex C
U2 SnRNP specific factors
142505840
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
142505840
TFTC complex
142505840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
DUF678
Motif
Other DBs
NCBI-GeneID:
142505840
NCBI-ProteinID:
XP_075475073
LinkDB
All DBs
Position
10:4995739..5005016
Genome browser
AA seq
1396 aa
AA seq
DB search
MAVPEYESSSSSASARQNANRNSRSASCNNASACYLAKTLLRGSVVLQAVRGHFRSPASY
DVVFGKETSIELAIIDEDGVMQSITEQPVFGTIKDIAVLPWNERFQAQSSKLRGKDILLV
ISDSGKLSFLSFCNEMHRFFPLTHLQLSAPGNSRHEVGRMLTVDSSGCFVAASAYEDQLV
IFSLSFSSNGQIIDKRISCPPEKDEFLQTDRGSTNISGTIWSMCFISKENSQPGKEYKPV
LAILLNRNVWGSFYRNELLLLEWNIEEHAIHVLYKFAEAGPLAHHIVEVPHVHGYAFLFR
AGDVVLMDFRNAHNPSCVYRTSLNFTPFEGKKYEHVGIPDIMDEECTCSIAASALLELSD
INKYDDPMNIDDYSSVKPGSNYVCSWSWEPGDSYIPRIIFSADSGDIYAMEVLFDSDRIR
VNLSASLCRGLPSKALLWLDGGFVATIVDMTDGMVLKFEEGLLCHRSPIQNIAPILDMTF
VDYPEEKFDQMFACSGMAPEGSLRIIRSGISVEKSLKTAPIYQGITGTWTLKMEASDPYH
SFLVLSFIEETRVLSVGISFSDVTDSVGFQPDVCTLACGLVADGVMVQIHQYGVRLCLPS
GAVHRKGITLVSPIWTSWFPDNMSISLGAVGDGIILVATSSPCFLFILGIRASLTHHYEV
YEIQCVKLQNEVSCFSIPQKHLELNKSLVNYGDNHHMAPLTIGNNDYMFVIGTHKPSVEV
VSFTCDKGLQIFAIGFISLTNTMGAAISGCVPQDVRLVFVDRLYVLSGLRNGMLLRFEWP
VTSTLLSARSSCQQSAVGSCMVNTQATWKYTSPNHKVLPISISNASGKAKGEFPINLQLI
AVRRIGITPVFLVSLGDSLDADVIALSDRPWLVHTARHSLSYTSISFQPSTHVSPVCSVE
CPGGILFVAENSLHLVEMVPSKRLNVQKFHLGGTPRKVLYHNESKLLLVMRTDLDNDSCS
SDICYVDPVTGSLFSSFKFEFGETGECMNLVKVGNEHVLVVGTSLSACPAIMPSGEAEST
KGRLVVLCLERMQYSDSGSATLCSKTGSSSDQNPSFCDIGGCAAEQLSSSSLCSCLEDNS
CDGIKLEETEAWKLRLAYSTIWPGMVLAVCPYMDRYFLASAGSSFYVCSFPNDNSQRVRR
LAVGRTRFTIMTLTAHFTRIVVGDCCDGILFYLYHEDSRKLELVYCDPVQRLVGDCMLMD
VDTAVVSDCKGSIAVVSCANHLEDEASPERNLMVSCSYYMGEISMSIRKGSFSYKLPADD
LTKDCDAASNVVNLTHNCFMASTLLGSIIIFIPFTREECALLEEVQSKLVIHPLTAPILG
NDHNEYRRRENVVGTPTILDGDILSQFLELTRMQQEAVLALPLASPSTAMLSFRTSMPVM
INQVVRLLERVHYALN
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggcggttccggaatatgaatcttcctcttcatcggcatcagcaaggcaaaacgccaac
cgtaactcgcgatcggcctcctgcaacaacgccagcgcttgttatttggcaaagacatta
ctcagaggcagcgtagttcttcaagctgtacgtggtcacttccgctcccccgcgtcctac
gacgtcgtcttcggcaaggagacatcaatagaacttgcgataatcgatgaagatggcgtt
atgcaatctatcaccgaacaacctgtgtttggtacgataaaagatattgcagttcttcct
tggaatgagagatttcaagcacagagttccaagttacgagggaaggatatattgcttgtc
atttctgattcagggaagctgtcgtttctttcattttgcaacgaaatgcacaggtttttc
ccattgactcatttacaactttctgctcctggaaactcgagacatgaagttggaaggatg
ttgactgttgattccagtggttgctttgttgctgccagtgcgtatgaggaccagttggtt
attttctcgctttcattttcctccaatggtcaaatcattgataagagaatctcttgtcct
cctgaaaaagatgaatttctgcaaactgatagaggatctactaatatctctggaactata
tggagcatgtgcttcatctcaaaagaaaactctcagcccgggaaggaatataagccagtt
ttggccattcttttaaataggaatgtttggggatctttttatcggaatgaacttcttttg
ttggaatggaacattgaggaacatgcaatccacgtattatataagtttgctgaagctgga
cccttagcacatcatattgttgaagtccctcatgttcacggatatgccttcctgtttagg
gctggtgatgttgtcctgatggattttaggaatgctcataatccttcttgtgtttataga
acaagtttgaattttactccatttgagggaaaaaaatatgaacatgttggaataccagat
attatggatgaagaatgtacgtgtagcattgctgcgtctgcgttgttggagcttagtgac
ataaataaatatgatgacccgatgaacatcgatgattacagtagcgttaaacctggttct
aattatgtctgctcatggagttgggaacctggtgactcatatattcccaggataattttt
agtgcagattctggagatatatatgcaatggaagttctttttgactctgatcgcatcaga
gtaaatctatctgcttctctttgcagaggtttaccatctaaggctcttttgtggcttgat
ggtggatttgtggcaaccattgttgacatgactgacggaatggtattaaaatttgaagag
gggttattgtgccacagaagtccgattcaaaatattgcgccgatcttggatatgacattt
gttgattatcctgaagagaaattcgatcaaatgttcgcctgctctgggatggctcctgaa
ggatctttacgaatcattcgaagtggtatcagtgtggaaaaatcgttaaaaactgctcct
atttatcagggtattactggtacttggacattaaaaatggaagcatctgatccctatcat
tcttttcttgtactgtcattcattgaagaaaccagggtgctctctgttggcattagtttt
tctgatgtgactgattctgttggttttcagcctgatgtctgtactttggcttgtggtctt
gtggccgatggggtgatggtccagatccaccaatatggagtcagactatgtttgcctagt
ggagctgtacatagaaaaggtattactcttgtatctcctatttggacttcatggttcccc
gataatatgtccataagtcttggagctgttggagatggtataatccttgtagcaacttcc
agtccgtgcttcttattcatccttggtattagagcttcattgacacatcattacgaagta
tatgagattcagtgcgtgaaattgcagaatgaagtgtcttgtttttccatacctcaaaag
caccttgagctgaataaatcattagtaaattatggagataaccaccatatggcgcctctt
acaattggaaataatgactacatgtttgttatcggtactcataagccttcagtagaagtt
gtatcctttacatgcgacaaggggctgcaaatttttgctatagggtttatttcattaacg
aacaccatgggagctgctattagtggttgtgttcctcaagatgtaaggcttgtctttgtt
gatcgtctgtatgttctttcgggattaaggaatgggatgcttcttaggttcgagtggcct
gttacttctacactattatcagctaggtcttcttgtcagcagtctgctgttggttcttgt
atggtgaatactcaggccacatggaagtatacatctccaaatcataaagtactaccaata
tccatttccaatgcatctggaaaggctaaaggagagtttccaattaatcttcagctgatt
gctgtgcgtcgtattggtatcacgcctgttttcttggtttccttgggtgattcccttgat
gctgatgtaattgctctcagtgataggccttggttagtgcatactgcaagacatagcctc
tcgtatacctccatctcctttcaaccttccactcatgtctctcctgtgtgttcagtggaa
tgccctggaggaattttatttgttgcggagaacagtcttcatctggtggaaatggtgcca
agtaagaggcttaatgttcagaaatttcatcttgggggcacgcctagaaaagtgttatat
cacaatgagagcaaattattgcttgtcatgaggacggatttggataatgattcatgttca
tctgacatctgttatgtggatccagtgacgggcagtttattttcatctttcaaatttgaa
tttggggagacaggggaatgcatgaatcttgtgaaagttggaaatgagcatgtgctggtg
gttgggacgagcctatctgcttgtccggccataatgcctagtggtgaagctgaaagtaca
aaaggtcgtttggtggttctttgccttgaacgtatgcagtattctgacagtggttctgcc
acactatgttccaagacgggttcatcgtccgatcaaaatccatctttctgcgacattggt
ggttgtgctgcagaacagctttcaagcagtagtctctgcagctgcctggaagataatagc
tgtgatggaatcaaacttgaagaaactgaagcatggaaattgcgattagcttattcaacc
atttggcctgggatggtccttgctgtgtgcccttacatggatcggtatttcttggcttct
gccggtagttctttttatgtttgcagttttccaaatgataactctcagagggtcaggaga
ttggctgttggaagaacgcgttttacaatcatgactttaactgcgcatttcaccaggatt
gttgttggggattgttgtgatggtattcttttctatttgtaccatgaggattccagaaaa
ctggagctagtatactgtgatcctgtccaacggctagttggtgactgcatgcttatggat
gtagatactgctgttgtttcagattgcaaggggagtattgctgtcgtgtcatgtgcaaat
catttagaagatgaggcaagtccagagcggaacttgatggttagttgttcttactatatg
ggggagatttccatgagtataaggaagggatcattttcgtacaaactcccagcagatgac
ctaacgaaggactgtgatgctgctagtaatgttgtaaatctgacacataactgtttcatg
gcatctactctgttgggcagcataataatcttcattccctttacaagggaggaatgtgcg
ttgctggaagaagttcaatctaagctggtgattcacccgcttactgctcctattttagga
aatgaccacaatgagtatcgaagacgtgaaaatgtggttgggacacctacgatccttgat
ggtgacattctgagtcagttcctggagctaacaaggatgcaacaagaagctgtgttggca
ttgcctcttgcatcaccaagtactgcaatgttaagttttagaacgtctatgccagttatg
atcaatcaagttgtcagattacttgaacgagtacattatgcattgaactaa
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