Primulina tabacum: 142505865
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Entry
142505865 CDS
T11246
Name
(RefSeq) THO complex subunit 6 isoform X1
KO
K13175
THO complex subunit 6
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142505865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142505865
03041 Spliceosome [BR:
ptab03041
]
142505865
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
142505865
Spliceosome [BR:
ptab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142505865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Ge1_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Hira
DUF1072
Beta-prop_Nup120_160
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
142505865
NCBI-ProteinID:
XP_075475108
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All DBs
Position
10:complement(8086419..8092716)
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AA seq
379 aa
AA seq
DB search
MGVERMDCRNWDEDAYRESILGERESLTRTIFRTTFAPNANPNPNSDHIATASSDGSIAS
YSISSCLAYGCGTARGENWLTAEPNFLTQGHDGPAYDVKFYGEDDDSLLLSCGDDGRVRG
WKWKEVMGSEAPTQGGKLKPVLDLVNPQHKGPWGALSPIPENNALAVDCQRGSIYAAAGD
SYAYCWDVEKCEVKTVFKGHSNYLHSIAACKLSNQIVTGSEDGTARIWDCTAGKCIQTID
PIPDKKSNTSYPCVSCVAIDSSESWLACGKGQSLSVWNLPARECVFSTTTHACIQDVLFD
NNQQILAVGAEPFLTRFNLNGKILSQIQCAPQSVFSISLHPSGVSSFLFTTFLHYFEPFQ
LSSSNSCMALDNFILDYIF
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgggagttgaaagaatggactgcaggaactgggacgaagacgcttacagagagagcatt
ttaggggagagagaatcccttacccggaccattttccgtaccacatttgctccaaacgct
aaccctaatcccaattccgatcacatcgccaccgcctccagcgacggctctattgcctct
tactccatttcctcctgcttggcatatggttgcgggactgcaaggggtgaaaattggttg
acggcggaaccgaattttttgactcaagggcatgatggacctgcttatgatgttaaattt
tatggtgaagatgatgattctttgctactgagttgtggtgatgatggccgagttcgaggg
tggaaatggaaagaggtcatgggaagtgaagctcctacacaaggaggcaagttgaagccg
gtgcttgatttggtgaatcctcagcataaaggtccttggggtgctctctctcctattcca
gagaacaatgctttggcagttgattgtcagaggggatccatctatgcagctgccggtgat
tcttatgcgtattgctgggatgtggagaaatgtgaggttaagacggtcttcaaagggcac
tcaaactacctacacagcattgctgcgtgcaagttgagcaatcagatcgtaactggttca
gaagatggcactgcacgaatatgggactgcacagctgggaaatgcatccaaacaattgat
cccataccagataagaaatcaaacacatcttatccatgtgttagttgcgtcgctattgat
tctagcgagagctggttggcttgtggaaagggccaatctttgtcagtctggaatcttcct
gctcgtgaatgtgtttttagcacgacaactcatgcttgtattcaagatgttctatttgat
aataatcaacagattttagctgttggagcagaaccatttctcaccagattcaacttaaat
ggaaaaattctttcacagattcaatgtgctcctcaatctgtattttcaatttctctgcat
ccttccggtgtaagttcctttttattcactactttcttgcactattttgaaccttttcag
ttatccagtagtaacagttgtatggcactggacaatttcatcttagattacatattttaa
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integrated database retrieval system
