KEGG   Primulina tabacum: 142505865
Entry
142505865         CDS       T11246                                 
Name
(RefSeq) THO complex subunit 6 isoform X1
  KO
K13175  THO complex subunit 6
Organism
ptab  Primulina tabacum
Pathway
ptab03013  Nucleocytoplasmic transport
ptab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142505865
  09122 Translation
   03013 Nucleocytoplasmic transport
    142505865
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptab03019]
    142505865
   03041 Spliceosome [BR:ptab03041]
    142505865
Messenger RNA biogenesis [BR:ptab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     142505865
Spliceosome [BR:ptab03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    142505865
SSDB
Motif
Pfam: Beta-prop_WDR3_1st WD40 Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR41 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 EIF3I Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_ACSF4 Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Ge1_WD40 Beta-prop_EML WD40_MABP1-WDR62_2nd Hira DUF1072 WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 Beta-prop_TEP1_C Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 142505865
NCBI-ProteinID: XP_075475108
LinkDB
Position
10:complement(8086419..8092716)
AA seq 379 aa
MGVERMDCRNWDEDAYRESILGERESLTRTIFRTTFAPNANPNPNSDHIATASSDGSIAS
YSISSCLAYGCGTARGENWLTAEPNFLTQGHDGPAYDVKFYGEDDDSLLLSCGDDGRVRG
WKWKEVMGSEAPTQGGKLKPVLDLVNPQHKGPWGALSPIPENNALAVDCQRGSIYAAAGD
SYAYCWDVEKCEVKTVFKGHSNYLHSIAACKLSNQIVTGSEDGTARIWDCTAGKCIQTID
PIPDKKSNTSYPCVSCVAIDSSESWLACGKGQSLSVWNLPARECVFSTTTHACIQDVLFD
NNQQILAVGAEPFLTRFNLNGKILSQIQCAPQSVFSISLHPSGVSSFLFTTFLHYFEPFQ
LSSSNSCMALDNFILDYIF
NT seq 1140 nt   +upstreamnt  +downstreamnt
atgggagttgaaagaatggactgcaggaactgggacgaagacgcttacagagagagcatt
ttaggggagagagaatcccttacccggaccattttccgtaccacatttgctccaaacgct
aaccctaatcccaattccgatcacatcgccaccgcctccagcgacggctctattgcctct
tactccatttcctcctgcttggcatatggttgcgggactgcaaggggtgaaaattggttg
acggcggaaccgaattttttgactcaagggcatgatggacctgcttatgatgttaaattt
tatggtgaagatgatgattctttgctactgagttgtggtgatgatggccgagttcgaggg
tggaaatggaaagaggtcatgggaagtgaagctcctacacaaggaggcaagttgaagccg
gtgcttgatttggtgaatcctcagcataaaggtccttggggtgctctctctcctattcca
gagaacaatgctttggcagttgattgtcagaggggatccatctatgcagctgccggtgat
tcttatgcgtattgctgggatgtggagaaatgtgaggttaagacggtcttcaaagggcac
tcaaactacctacacagcattgctgcgtgcaagttgagcaatcagatcgtaactggttca
gaagatggcactgcacgaatatgggactgcacagctgggaaatgcatccaaacaattgat
cccataccagataagaaatcaaacacatcttatccatgtgttagttgcgtcgctattgat
tctagcgagagctggttggcttgtggaaagggccaatctttgtcagtctggaatcttcct
gctcgtgaatgtgtttttagcacgacaactcatgcttgtattcaagatgttctatttgat
aataatcaacagattttagctgttggagcagaaccatttctcaccagattcaacttaaat
ggaaaaattctttcacagattcaatgtgctcctcaatctgtattttcaatttctctgcat
ccttccggtgtaagttcctttttattcactactttcttgcactattttgaaccttttcag
ttatccagtagtaacagttgtatggcactggacaatttcatcttagattacatattttaa

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