Primulina tabacum: 142517636
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Entry
142517636 CDS
T11246
Name
(RefSeq) vacuolar sorting protein 39-like isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ptab Primulina tabacum
Pathway
ptab04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
142517636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptab04131
]
142517636
Membrane trafficking [BR:
ptab04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
142517636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
TPR_WDR35
AlaDh_PNT_N
TPR_2
Motif
Other DBs
NCBI-GeneID:
142517636
NCBI-ProteinID:
XP_075476121
LinkDB
All DBs
Position
1:complement(3064503..3074236)
Genome browser
AA seq
1010 aa
AA seq
DB search
MVHSAYDSFQLIPNSASRIDAIESCGSTLILSCSDGSLRIYGPESSAGEDRSPLSTVSEF
YHHTLELKKEPYVLERTINGFSKKPMLAMEVIKSRELLLSLSESIAFHRLPNLETLAVIT
KAKGANAYSWDEKRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVPDHVKSMSWCGENICL
GIRREYVILNSTNGALSEVFPSGRTAPPLVVSLPSGELLLGKDNIGVFVDQNGKLLQEGR
ICWSEAPTSVVIEMPYAVGLLPRHIEIRSLRNPYPLIQTVVLRNARRLLQSTHAMIVALE
TSVYGFFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRATREQSIHIRYAHYLFEN
GNYEEAMEHFWASQVEITYVLSLYPSIILPKSSVVPEPEKYMDSSGDALDLSRGSSSLSD
DMESSIHPHALDSDERVDLESRKMNHNTLMALIKFLQRKRFNIVEKAAAEGTDEAVSDAV
GNSFVSYGYNRPKKPIKGRANAPINSVAREIAAILDTALLQALLLTGQPSAALELLKGLN
YCSVKICEEFLQERNQHVCLLELYKCNAMHREALKLLHKLVEESNSNNPPAELSQKFKPE
MIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKKHAPSMQAT
YLELMLAMNENSISGNLQNEMIQIYMSEVLDWYADLNSQGKWDEKIYSPTRKKLLSALDS
ISRYNPEIILKRLPPDALYEERAILLGKMNQHELALSIYVHKLNVPELALSYCDRVYESA
VGQHAAKSHGNIYLTLLQIYLNPRKTTKNFEKRIANLISSQSFAIPKVGPGTGKTKGRLN
KKIAEIEVAEETRFNTSGTDSGKSDGDTDDAIELGASTIMLDKVIDLLGQRWDRINGAQA
LKLLPRETKLKNLLPFLGPLLRKSGEAYRNFSVIKSLRESESLQVKDELYSHRKSVVRIT
GDSMCSLCNKKIGTSVFAIYPNGKTIVHFVCFKDSQNMKAVAKGSPLRKR
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacagcgcctacgattcattccagctaatcccaaattccgcatcaagaatcgac
gccatcgagtcttgcggctccaccctcatcctctcctgctccgacggctccctccgtatc
tacggccccgagtcctctgctggggaggatcgatccccgctgtctaccgtttccgaattc
tatcatcacacgctagagctgaaaaaggagccctatgtgctcgagcggacgattaatggc
ttctccaagaagccgatgctcgcgatggaagttattaagtcgagggagctcctgctctcg
ctctcggagtcgatcgccttccataggctgcccaatttggagactttggctgtgattacg
aaggcgaagggagcgaacgcttattcttgggatgagaagagggggttcctctgcttcgcg
cggcagaagagggtctgtatttttaggcacgacggcgggcgtggttttgtggaggtgaaa
gaatttggtgttccagaccatgtgaagtcaatgtcatggtgtggtgaaaatatatgtttg
gggattcgaagagaatatgtcatactgaattcaacaaatggtgcattgtcagaggttttt
ccttcagggagaactgccccgccattggttgtgtctcttccgtctggagagcttcttctg
ggaaaggataatattggagtatttgtcgatcaaaatggtaaacttcttcaggaaggtagg
atttgctggtcggaggctcccacatcagttgttattgagatgccatatgcagtaggtctt
ttaccaagacatattgagatacggtctcttcgaaatccttatccactgattcaaactgtt
gttcttcgtaatgctcgccggctccttcagagcacccatgctatgattgtagcactagag
acttctgtttatgggttttttccagttccccttggtgctcagattgttcagctaacagct
tcaggcaattttgaggaagcactggctttgtgcaagttacttccgccagaagattcaagt
cttcgagccactagggagcagtcaattcatataagatatgctcactatttgtttgaaaac
ggtaactatgaggaggccatggaacatttttgggcatctcaggtggaaatcacttacgtg
ctttccctgtacccatcaatcattcttcccaaatcatctgttgtacctgaacccgagaaa
tatatggatagcagtggagatgctctagatctctcaagaggttcctcgagcttgtcagat
gatatggaatcttcaattcatcctcatgcattggattctgatgagagagtagatcttgaa
tccaggaagatgaaccacaatactctgatggccctgattaagttcttgcagagaaagaga
ttcaatattgttgaaaaagctgccgctgaaggaactgacgaagctgtttcagatgctgtc
ggaaatagttttgtttcatatggatacaatcggcccaagaaaccaattaagggtcgagca
aatgcgcccatcaactctgttgctcgtgaaattgctgctatacttgacacagcgttactt
caggcccttctattgactggacaaccttcagctgctctggaactattaaagggtcttaat
tattgtagtgtaaaaatatgtgaagagtttttgcaggaaagaaatcagcatgtttgcctg
ttggaactttataaatgtaatgcaatgcaccgtgaggcactcaagctgcttcataaatta
gttgaagagtcaaactcaaacaatccaccagccgagctctcccagaagttcaaacctgaa
atgattatcgagtatctgaaacctctctgtggcacagatccgatgctagtcctagagttc
tcaatgctagttcttgaaagctgccccacacaaactatcgaactcttcttgtctggaaat
attccagccgacctggtaaactcttatctaaaaaaacatgctccaagcatgcaggctaca
tatttggaacttatgcttgcaatgaatgaaaacagcatctcaggaaatctccaaaatgaa
atgatacaaatatatatgtcagaagtactcgactggtatgcagatcttaattctcaggga
aagtgggatgagaaaatttattctcctacaaggaaaaaactgttgtctgctttggatagc
atctctaggtacaacccggagataatattgaagcgtcttccaccagatgccctgtatgaa
gaacgtgcgattctattgggcaagatgaaccaacatgagctagctctgtccatttatgtt
cacaagcttaacgttcctgaactggcactgtcatattgcgatcgggtttatgagtccgca
gttggtcaacatgcagcaaaatctcatggcaacatatatcttactctgctgcaaatatat
ttgaatcctcggaagacaacaaaaaactttgaaaagagaattgccaatttgatttcttct
cagagctttgctattcctaaggttggtcctggaacaggtaaaaccaaaggtcgtttaaat
aagaaaattgcggaaattgaggttgcggaggagactcgcttcaacactagtggcactgac
agtggaaagagtgatggtgataccgatgatgcaattgagttaggagcttctaccatcatg
cttgataaggtcattgatttattgggccaaagatgggatcgaataaatggagcacaggcc
ttaaagctgctacctagagaaactaagctaaagaatctacttccttttcttggtccactt
ttgagaaaatccggtgaagcataccgaaatttttctgtgataaagagcttgagagagagt
gaaagcctacaggtaaaagatgaattatatagccataggaaaagtgttgtgaggattact
ggagacagtatgtgctctctttgcaacaaaaagataggaactagtgtctttgcaatttat
cccaatggtaagacgattgtgcactttgtttgcttcaaagattcacagaatatgaaagct
gtggcaaaaggctcaccgttgcgcaagaggtga
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