Primulina tabacum: 142517837
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Entry
142517837 CDS
T11246
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142517837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142517837
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142517837
mRNA degradation factors
5'-3' decay
Decapping complex
142517837
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
142517837
NCBI-ProteinID:
XP_075476415
LinkDB
All DBs
Position
11:complement(19734543..19740031)
Genome browser
AA seq
814 aa
AA seq
DB search
MEKLGDGKDFSDRNDSGSGSLSDGAAFVASQYSFFGKDVMDTVELGGLEGEEEGVSVLGG
GLGGEEELQEYQLFSKNEGSVFGSLSEIDDLATTFAKLNKVVSGPRHPGIIGDRGSGSGS
FSRESSSATDWAREADFPDWLDHRMSDSECYDENKRWSSQPHLSSLYHPESKPLHRTSSY
PQQQPQLQRFSSEPILVPKSSFTSFPPSGLLQASMSNLSHLNFLSLAGGSQSPFSLPNQS
PLSGSSLCFAEMPIRFCDNANMLHSISPNFSHNNRLRNQCSSNTNLLRGDNSILLNNFLQ
HQYQTGLLSPLISSQQQRLYLPYHSPLANFSALPPHTCNTFPSPSYFGKYTYTDKRESKS
KSARRDRHSARLSNQGPDSSGHRSESHLPQFKSKHMTAEEIETILKIQQAATHGNDPYVD
DYYHQACLAKQSTESRSKYRFCPSHPREQSSRSRNSAESQPYFHVDALGKLCFSSIRRPQ
PLLEIDPPPSASGDGTAEHKSSQKPLEQEPMLAARVTIEDGFRLLLDVEDIDRLLQFTQP
QDGGSHLRRKRHVLLEGLAASLQLVDPLGKSSNPIGLSPKDDILFLRLVSVSKGQKLISR
FLRLLLTGSELARIVCMAIFRHLRFLFGGLPSDPEAADTNNGLAKAVTLCVSSMDLNSLS
ACLAAVVCSSEHPPLRPIKSPAGDGASIILTSVLDRATHLLTGSQTPSHFSMPNHTLWQA
SFDAFFSLLTKYCMSKYDSIMRSLTTESPLNSEAEATRAVSREMPVELLRASLPHTNESQ
KKLLLNFAQRSIPVTGFNTHDGGGGQINPESVRG
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggagaagttgggggatgggaaggatttcagtgaccgcaacgactcgggttctggctct
ctttctgatggagcagccttcgttgcatcccagtactcgttttttgggaaagatgttatg
gatacagtggaattagggggtttggaaggtgaagaagagggtgtttctgttcttggaggt
ggacttggtggcgaggaagagttgcaagagtatcaattatttagcaaaaatgagggatca
gtatttggatcattgtctgaaattgatgatctggcgactacttttgcaaagttgaacaaa
gttgtttctgggccaaggcaccctggaattattggtgatcgaggatctggatccggatct
ttctctagggagagttcgtctgctacagattgggcacgagaggcagattttcctgactgg
cttgaccatcgtatgtctgactcagaatgttatgatgaaaataagagatggtcatcacag
cctcatctctcttctctgtatcatccagaatctaaaccgttgcatagaacatcgtcatac
cctcagcagcagccacaactccaacggttctctagtgagcctattttggtcccaaaatct
tctttcacttccttcccaccatcaggattgctacaagcttcaatgagtaatttgagtcat
cttaatttcttatctcttgctggtggatctcagtcacccttctctttgccaaaccagtct
ccattatctggttcaagcctttgttttgccgaaatgcctattaggttttgtgataatgct
aacatgctgcactcaatctcccctaacttctcacataacaatcggctgcgaaatcagtgt
agtagtaacaccaatcttcttcgtggtgataattctatcctcttaaacaattttttacaa
catcagtatcaaactgggttattatcacccctaatatcctctcagcaacagagattgtat
cttccatatcattcgcctttagccaatttttcagcattgccacctcacacttgcaacacc
ttcccttcaccatcatattttggcaagtatacgtacaccgataaaagagagtcaaaatct
aaatcagcacgcagggatagacattctgcccgactttctaaccaagggcccgattctagc
ggccataggagtgagagtcatttgccacagtttaaatcaaaacatatgaccgctgaggaa
atagagaccattcttaaaattcagcaggcagccacccatggaaacgacccatatgtagat
gattattatcatcaagcctgtcttgccaaacaatctactgaatcaaggtcaaaatatcgg
ttttgtccttcacacccaagggaacaatcttccaggtcccgtaatagtgctgaatcacaa
ccatatttccatgttgacgcacttggaaaactttgcttttcttcaatccgtaggccccag
cctcttcttgaaattgatcctcctccctctgctagtggagatggtactgctgagcataaa
tcatctcagaagcctttggaacaggaaccaatgcttgctgcaagggtcactattgaggat
gggtttcgccttcttttggatgttgaagacattgaccggctcttacagtttactcaaccc
caagatgggggaagtcatcttaggcggaagcgccatgttctattagaaggcttagctgct
tctcttcagcttgttgatccgcttggtaaaagtagtaatcctatcgggctgtctcccaag
gatgatattttgtttctacgattagtttctgtttctaaaggccagaagcttatttcaagg
tttcttcgccttcttttaactggaagtgaacttgctcgaatagtttgcatggccatcttc
cgccatttaagatttctgtttggtggccttccctctgatccagaagcagctgataccaat
aatggtcttgcaaaagcagttactttgtgtgttagtagtatggatcttaattcacttagt
gcttgtcttgctgctgtagtttgttcctcagagcatccacctcttcgcccgataaagagc
cctgctggagatggtgcctccattattttaacgtctgttttagatagagcaactcacttg
ttaacaggttcgcagactcctagccacttcagcatgcctaatcacactctttggcaggct
tcatttgatgcattcttcagtctcttgacaaagtactgcatgagtaaatatgatagcata
atgcggtcattaaccactgaaagcccactaaactcagaggcagaggcgacaagagctgtg
agcagggagatgcctgtggaacttctacgtgccagtctcccacacactaatgagagtcag
aagaaattgttattgaattttgctcagcgatccatacctgttactggatttaatactcac
gatggaggtggtggacaaataaatcctgaatcagtgaggggttag
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