Primulina tabacum: 142517861
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Entry
142517861 CDS
T11246
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ptab Primulina tabacum
Pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142517861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptab03041
]
142517861
Spliceosome [BR:
ptab03041
]
Complex A
U1 snRNP components
U1 related factors
142517861
Complex B
142517861
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
142517861
NCBI-ProteinID:
XP_075476462
LinkDB
All DBs
Position
11:complement(38594187..38604803)
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AA seq
1092 aa
AA seq
DB search
MVNNPQFTGMQALRPRIVGGHVGPPPSPLPPMSMQFRPAVPPPPQPQPQPQPPQPYIPVT
PQQFQPVGHSNMGMPPHSMPIQYPQGAPPPPPLPPAQRTGLVLPQGPPLPLTDFQPNRPV
MPAPVQPQISNNFMPGFSGPVISPAAYTVSSSSSGLQQMNVGSISQNQSMPQTNVPNFSI
SGHPWYPMGNQNPQSTIQPQQEVEQGAGGQPWFTTGNQNLKPVTPLQQIGEQNASAQQLF
PSANQNVQSGIPSQRTEELTVMGTITNPALIEKALSEWKEYCSRDGKKYYYNKRTGISLW
EKPLELMTLTERADASTGWREFTTPEGRKYFFNKVTKQSKWAIPDEVKLARERATVISCE
GTPVMKHVTSQASAGVPTSEIPASIPNANNSSSKGGQKIVSSPVSVEPTVNPEPAAFSGL
SGKQEEAAYTRVDVTGSHNPLEIAASMVAVDTSVPIVLDSSMTAPMRTANSMSPREATPP
SVDETSDGGLEETNEISVISGSGSIIAPEEKKVEHGPVVYESKEEAKNAFKVLLETANVG
SDWNWDQAMRVIINDRRYGALRTLGERKQAFNEFVGQKKKQEVDERRARQKKAQEDFKKM
LDESEDLTSSTRWSKAASMFENDERFQAFERAKDREDLFEDHLEDLKKKERAKALEERKR
HKTEYLEFLKSCDFIKASSQWRKIQHRLENDGRCSRLEKIERLEIFQEYIRDLELVEEEQ
RKLRMEDMRKAERKNRDEFRKLMEEHVDNGVLTANTHWRDYCTKVKDMTAYLAVSSNTSG
SKAKDLFEDVIDDLEKQYLEDKEKIEGAIKNGKISLSTSCTFEDIKAALPKEITSAKISD
INLKLVYNELMEITKEKEEKEAKKRKRLAEDFYDFLFTLKEITAFSKWEDCKPLVGDRFL
GDESFFQEIFDNFIIELKEKAKEKERRRREEKAKKEKRREDKERKNKARRAESKKGRERH
KRGETDSDDSKSHSFEENRRSRDRSKKHRKRCMDHFDDASFDGDEKDRSRSHRHSTDTKK
SKQIEKQSSTADVDPENESKKQKRDHRDGRNKDVDVKELSHQEPCEDGEGGRVPCTNGCM
HGRWDDWTGHVH
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggtcaataatcctcagttcactggcatgcaggctctccggcctcgcatagttggtggt
catgtgggtcctcctcctagtcctcttcctcccatgtcgatgcaatttcgaccagcagtt
ccgcccccgccacagccacagccacagccacagccgcctcaaccatacattcctgtgact
cctcagcaatttcagccagttggacattcaaacatggggatgcctcctcattccatgcca
attcagtatcctcaaggagcgccaccgcctcccccactccccccagctcaaagaactggt
cttgttctgccgcaaggaccaccgctgccgctgacagatttccagcctaatagacctgtg
atgcctgctcctgttcagcctcaaatctcgaataatttcatgcctggtttttctggtcct
gttatttctccagcagcatacactgtatcctcgtcatctagtggcctacagcaaatgaac
gtgggctcaatatctcagaatcagtcgatgccccagaccaatgttcccaatttttctatc
agcggacacccatggtatcctatgggaaatcagaacccgcaatcgaccattcaaccacag
caagaggtggaacaaggtgctggaggacaaccgtggtttacaactgggaaccagaattta
aaaccggttacccctttgcagcagatcggggagcaaaatgctagtgcacaacaattgttt
ccaagtgcaaatcagaatgtacaatccggaataccttctcagcggactgaggaactcact
gtcatggggacaattaccaaccctgccctcatcgaaaaggctttatcagaatggaaagaa
tactgctctcgtgatggaaaaaaatattattacaacaaacggacagggatttctctgtgg
gagaagccgttagaattgatgaccctgactgagagggctgatgcatcaactggctggaga
gagttcactactcccgaaggaagaaagtatttcttcaataaagttaccaaacaatcgaag
tgggccattccagatgaagtcaagttggctcgtgaacgggcgactgtgatttcatgtgaa
ggaacaccagtaatgaagcatgttacttcccaggcctcagctggtgttcctacttctgag
atcccggcttcaattccgaatgcaaataattcatcttctaaaggtggtcaaaaaattgtt
tcaagcccagtttcagtggaacctactgttaatccagaacctgcagccttttctggatta
tcgggcaaacaagaggaggctgcttatacaagagtagatgtaacaggatcgcataatcct
ttagaaattgctgcttcaatggttgcggtagatacatcagttcccattgtgcttgacagc
tccatgactgcaccaatgagaactgctaatagcatgtcacctcgggaagctacaccaccg
tctgtcgatgaaacttcagatggaggtctggaggaaaccaatgaaatatctgtgatatct
gggagcggaagcatcattgcacctgaagagaaaaaagtagagcatggacctgttgtctat
gagagcaaagaggaggcgaagaatgcttttaaagttcttttggaaacagcaaatgttggc
tcagattggaattgggaccaggccatgagagtgataataaatgaccggagatatggtgca
ctaagaactctcggtgaaagaaagcaagcttttaatgagtttgtgggacaaaagaaaaaa
caggaagttgacgagaggcgggccagacagaagaaagcgcaggaagatttcaagaaaatg
ttagatgaatcagaagatttgacttcatcaacaagatggagcaaagcagcatctatgttt
gaaaatgatgaacgttttcaagcttttgaacgagctaaagatcgtgaggacctctttgaa
gaccatttagaggatctgaagaaaaaggaacgagcaaaggctttggaggagcgcaaacgt
cataagacagagtatttggagtttctaaaatcttgtgattttatcaaggcgagtagccaa
tggcgtaaaattcaacatcgtttagaaaatgatgggagatgctcacgcctagaaaaaatt
gagcgcttggaaatcttccaagaatatatacgagatctagagttggtagaagaggaacaa
agaaaattaagaatggaggacatgaggaaagcagaacgtaaaaaccgtgatgaatttcga
aagctgatggaggaacatgttgataatggcgtacttactgccaatactcattggcgtgac
tattgtacaaaggtgaaagacatgaccgcatatctggcagtatcttcgaacacctcaggg
tctaaagcaaaagatctgtttgaggatgtcatagacgaccttgaaaaacagtatttggag
gacaaggagaaaattgaaggtgcaataaagaatggaaagatatcattgtctacatcttgt
acttttgaagacatcaaggctgcgcttcccaaagaaattacatcggcaaaaatatctgac
atcaacttaaagcttgtatataatgagttgatggaaataactaaagagaaagaggaaaaa
gaagctaagaagcgtaaacgtctagctgaagatttctatgacttcctttttaccttaaag
gaaataacagcattctcgaagtgggaggattgcaaaccacttgttggagatcggtttctt
ggagacgaaagctttttccaggaaatctttgacaacttcattattgaactaaaagaaaag
gcaaaagagaaggagcgaaggagaagagaggaaaaggcaaagaaggaaaaaaggagagag
gataaggagagaaagaataaagctcggagagctgaaagcaaaaagggtagggagagacat
aagagaggtgaaaccgatagtgacgactctaagtctcacagttttgaagagaatagaagg
tcgagagacaggagcaagaaacatcggaagcggtgtatggatcatttcgatgatgccagt
ttcgacggtgatgagaaggataggtctaggtctcatagacacagcactgataccaaaaag
tcgaaacagattgagaagcaatcctcgaccgcggatgtggatcctgaaaacgagagcaag
aaacaaaaaagggatcatcgggatggtcggaacaaggatgttgatgtcaaggagctgagt
catcaggagccgtgcgaggatggagagggaggtcgggtcccctgcacgaatggatgcatg
catggccgatgggatgattggactggccacgttcattga
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