Primulina tabacum: 142518896
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Entry
142518896 CDS
T11246
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142518896
03015 mRNA surveillance pathway
142518896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142518896
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
142518896
5.6.2.5 RNA 5'-3' helicase
142518896
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142518896
mRNA cycle factors
Common to processing body (P body) and stress granule
142518896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
UvrD-helicase
PhoH
ATPase
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
142518896
NCBI-ProteinID:
XP_075477862
LinkDB
All DBs
Position
11:complement(18180222..18220970)
Genome browser
AA seq
1281 aa
AA seq
DB search
MDSQANNLYETASQPDEGNDAYTFLEFHTQGEEEFVYPEFQEFSQPIRSSSSLWPAPSDS
IAAADTAFSTESSPKSKLRGGISNSNNNNNNSAASGSGSSGNNGSKEGVVEALAAGMNGL
NFEETGDDDVFYHGKGDFAEHACKYCGITNPACVARCNVPSCRKWFCNSRGNTSGSHIVN
HLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSSNA
LKDMNWDLSQWCPLIDDRCFLQWLLKVPSEQEQLRARQISAQQINKIEELWKTNPDATLD
DLEKPGVDEEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITVRWDIGLN
KKRIAYFVFPKEDNELRLVPGDELRLRYPGDTSHPSWQSVGHVIKLTSQEEVALELRVSQ
GVSVDVNHGFNVDFIWKSTSFDRMQGAMKTFALDEISVSGYIYHHLLGHEVDMQIVRNTM
PRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMARQGQGQVLV
CAPSNVAVDQLAEKISATGLKVVRICAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKL
QQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDE
STQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVMLGVKPIR
LQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSPGIDFPWPVPNRPMFFYVQMGQEEI
SSSGTSYLNRTEAANVEKIVTSFLKSGVVPSQIGVITPYEGQRAYILNYMSRNGALRQQL
YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPK
VLSKQSLWNGLLTHYKEHECLVEGSLNNLKQSMVQFQKPKKIYNDHRLFYGGGPGGVPND
TFRSVASSPGADRRDARSRGPYMPPAPPNGAHKPGVHLAGYAMPRVPLSPYHSGPPSQPY
AIPTRGAVHGPVGTVPQMPQPVSRGFGGRGSISAPIGSHLPHQPVAQPPIGSIASNYNFP
SMENASSQPNAGGLLFQPEYVTNVTGQVPSQTFSDRFSMGGMSQDFLGDDFKSQGSHVPY
TEFSTQETQGGYGVDYITQGAQGGFPGSFLNQNSHAGYGRFATGNDFMSQNEATMSLGGI
STRGRFSDGSQSIKAGEYMAHGSLGLFAQAAFPEQSQNDFSQNRGGPLQTESLLNPLYSQ
PFTHYNAQQPNMQSSQQQHSS
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcaggcgaacaatctttacgagactgcgtcgcagccggatgaggggaacgat
gcgtatacattcttggaattccacacgcaaggcgaggaagaatttgtttaccctgaattt
caggagttctcgcagcctattcgatcgtcttcctctctgtggcctgcaccttctgattct
attgctgctgctgatactgctttctccactgagtcatctccgaagagtaaactccgcggt
ggaattagcaacagcaacaacaacaacaataatagcgctgccagcggtagtgggagtagt
ggtaataatggtagtaaggagggagtggtggaagcattggcggcagggatgaacggtctg
aactttgaagagacgggtgatgacgatgttttttatcatgggaagggggacttcgctgag
catgcttgcaagtactgtgggatcaccaaccctgcttgtgttgcaaggtgcaacgtccct
tcttgtaggaaatggttctgtaattcacgagggaatacatctggttctcacattgtaaat
catctggtgagagcaaagcacaaggaagtgtgtcttcataaagatagtcctttgggagaa
acaattcttgagtgttacaactgtggatgccggaatgtcttccttcttggattcatatct
gcaaagacagagagtgtggttgttcttctttgtagagaaccttgccttagttctaacgct
ttgaaggacatgaattgggatctcagtcagtggtgccctcttattgatgacagatgtttc
ttgcaatggctgttgaaggtcccatctgaacaagagcagttgagggcacgacaaataagt
gcccaacagataaataaaattgaagagctttggaagacgaatcctgatgctaccttggat
gatctcgagaaacctggtgtggatgaggaacctcagcctgtagtgctcaagtacgaggat
gcataccagtatcaaaatgtttttgcaccactcataaagctcgaagcggactatgacaag
atgatgaaagagtctcaaagcaaagataacatcacagttcgatgggatattggcctgaat
aagaagcgtattgcttactttgtttttccaaaggaagacaatgagttacggctagtacct
ggtgatgaattaaggctgcgttatccaggagatacatctcatccctcgtggcagtctgtg
ggtcatgtgataaaattaacttcacaagaggaggttgctcttgagcttcgtgttagtcag
ggtgtttctgttgatgtgaaccatggttttaatgtcgactttatttggaaaagcactagt
tttgatcgaatgcaaggggccatgaaaacgtttgcgctggatgaaataagtgtcagtggg
tacatttatcatcatttactgggccatgaagttgatatgcagatagttcgaaatacgatg
cctcgtcgatttggtgcaccgggtcttccagaacttaatgcatctcaagtttttgctgtg
aagagtgttttacaaaaacctataagtctcatacaaggtcctcctggaactggtaaaact
gtcacctctgctgcaattgtatatcatatggcaagacaagggcagggacaggttctggta
tgtgctccaagtaatgtggctgtcgatcagctagctgaaaagataagtgccactggtttg
aaggttgtcagaatttgtgcaaagtcgagggaagctgttagttcccctgttgagcattta
accttgcattatcaggttagacatctcgacacttctgaaaagagtgaacttcacaagtta
cagcagctgaaagatgaacaaggggaattgtccagcagcgatgagaaaaagtataaagct
ctcaaacgagctactgaaagggagatatctcagagtgctgatgttatctgttgtacatgt
gttggagctggagatcctcgcttggcaaacttcagatttcgccaggtgcttatcgacgag
tctacccaagcaacagagcccgagtgtcttattcctttggttcttggagtgaaacaggtt
gttcttgttggagaccattgccaacttggtccggtcattatgtgtaagaaagctgctcga
gcgggtcttgcccagtcattatttgaacggcttgtgatgcttggggtgaaacctattagg
ttgcaggttcagtataggatgcatcccgccctttcagagtttccttctaacagcttttat
gaaggtactcttcaaaatggggtgacaattaacgagaggcaatcaccaggcatagacttc
ccttggcctgtgccaaatcgtcccatgtttttctatgtccagatgggacaagaggagata
agttcaagtggaacatcctacctgaataggactgaggctgcaaatgttgagaaaatcgtt
acttcatttttgaaaagtggtgtagttcctagtcagattggtgttataaccccatatgaa
ggccagcgggcatacattttgaattatatgtctcgcaatggtgctttacgacagcaacta
tacaaagaaatcgaggtggctagtgtagattcatttcagggaagggaaaaagactacata
attttgtcttgcgtaaggagtaatgaacaccagggaattggtttcctcaatgatccacgc
cggcttaatgttgccctcacacgtgctcgttatgggattgttatcctaggaaatccaaaa
gtattgagcaagcagtccctctggaacggcttattaacacactacaaagaacatgaatgc
ttggttgaaggatcactgaataatttaaagcagagcatggttcaatttcagaagcccaaa
aagatatacaatgatcacagacttttctatggcggtggaccaggcggcgtccccaatgat
acttttcgatctgttgcctctagccccggtgctgataggagggatgctcgctctaggggt
ccttacatgccgcccgcaccgcctaatggtgctcacaaacctggtgttcaccttgctggt
tatgcaatgccacgagttcctctctctccataccacagtgggcctccttcccagccttat
gccattcctacccgtggtgctgtacatggacctgttggaactgttcctcaaatgccacaa
cctgtaagtcgtggatttggtgggcgtgggagcatcagtgctcctattggtagccatctt
ccacatcagccggttgcgcaaccccccattggaagtattgcatctaactacaatttccca
tctatggagaatgccagcagccagccaaatgctggtggattattatttcaaccagaatat
gttactaatgtgacaggtcaagtaccaagccaaacatttagcgaccgattctcaatgggt
ggcatgtctcaggatttcttgggtgatgattttaaaagccagggatctcatgttccatat
actgaattctccactcaggaaactcagggtggatatggtgttgactatattacacagggt
gctcaaggtggatttcctgggagtttcttaaaccagaattctcatgctggatatggtcgt
tttgcaacaggaaatgacttcatgtctcagaatgaagctactatgtctttgggtggtatc
agtactcgaggacgttttagtgatggttcccaaagcataaaggctggggaatacatggcc
catggttcgctggggctatttgcacaggctgcgtttcccgaacaatctcaaaatgatttt
tctcaaaaccgtgggggtccacttcagactgagagtttgctgaatcccctctactcacaa
ccatttactcactacaatgctcaacagccaaacatgcaaagttctcagcaacagcattca
tcctag
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integrated database retrieval system
