Primulina tabacum: 142519009
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Entry
142519009 CDS
T11246
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142519009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142519009
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142519009
mRNA degradation factors
5'-3' decay
Decapping complex
142519009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WDR55
DUF5536
GerPC
Beta-prop_EML_2
DUF2497
EIF3I
Motif
Other DBs
NCBI-GeneID:
142519009
NCBI-ProteinID:
XP_075478000
LinkDB
All DBs
Position
11:complement(2080652..2097404)
Genome browser
AA seq
1435 aa
AA seq
DB search
MATPGNPNPPAVAPPFDMPKFFRPSTSPAATPASSSNPQNITNSDSAFSNPNLISTPFPP
PSASFPPPATSGGGIYSYPSQASPFHHQPQYHHLPLYGPPSNSREFANLHPQRSMSYPTP
TLQPHVPLPSSPHHLNFQAPASPQNPNNHGARLMALLSAPPSMLDIPNESTMSMPRTLPT
SSGSDFSMPQFVNNLPSGPGLSVSHQGPVTRMLSSKLPKGRHLNGDHLVYDIDIRLPGEV
QPQLEVTPITKYGSDPGLVVGRQIAVNKTYICYGLKLGAIRVLNINTALRSLLKGLAQRV
TDMAFFAEDVHLLASASVDGRVYVWKISEGPDEEDKQQITGRIVTAIQITGEGESVHPRV
CWHCHKQEVLAVGIGKHILKIDTTKVGKGEKISADEPLKCTVDKLIDGIEFVGSHDGEVT
DLSMCQWMTTRLVSASVDGTIKIWEDRNPLPIAVLQPHGGQPVNSVAFLAVSHRSDHIIL
ITGGPLNREVKIWVSASEEGWLLPIDAESWRCVQKFELKSSEARIEEAFFNQVIALPQAG
LLLLANAKRNAIYAVHLEYGPNPAATRMDYIVEFTVKMPILSFTGTSESLPNGEQVVQVY
CVQTQAIQQYALDLSQCLPPAIGNVVYEKSDSNVSREASFIEGLTNLESSGIKATEVSMT
SSAPPSSMYGSGLENIPAVRCPVNHVSAESPSRQEFGPSSMEIKPMPSPAIASDGNLSSV
ASPSLPMSPRLSGTLSGFRNSSSNFEPGVLSNDRGVEPKIVEYTVDRQTDAIHSNSSDVA
SFDGDSRNYENKHSQDDISLALNHPIKFRHPTHLVTPSEILMANSSSEVIHTTETQIEVE
QKIQDVVMSNDTRNSVVEVIVMGETKFDQNIDDGSREELQTSLSEKMENVFCSQASDLGI
EMARECRAISPEAYVVEEDRQFDGTGGTETVAQPSTVEEEIHDSTKDGPSRVVDPSIPVL
VPQPVPNTKGKKQKGKTAQGSGPSSPSPCAFNSADSSNEPGIGYSTPVESQIYSMQEILH
QLVALQKDMQKQMTTMIAVPVTKEGKRLEASVGRNMEKAVKLNADALWARLQEENAKQEK
ASRERAEQVTNMISSFLNKDLPSLIEKTVKREVSSLGQSVARAIVPTIEKAISTSVVESF
QKGVGDKAVNQLEKSINSKLEALVAKQIQSQFQTSGKQALQETLKSSLEVSMIPAFEMSC
REMFEQVDSAFQKGMVEHTAAAQQQFEASQSSLALVLRDAITSASSISQTLSNELLDGQR
KLVDLAVAGVNSKAANPLINQLSNGPLGGLPDKLEVDPTKELSRLIAERKYEDAFVAALH
RSDVTVVSWLCFHVDLPTLLAVNPLPLSQGVLLSLLQQLSCDISKETPRKLTWMREVLTA
INPTDPVIMVHVRPIFQQVYQILDHHRSIPTTTGSELSNVRLIMHVIHSMLMGSK
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccctggaaatcccaatccacccgctgtagctcctccttttgacatgcccaag
tttttcaggccttccacttccccggcagcaacacctgcttccagttccaatccccaaaac
attaccaacagtgatagcgccttcagtaaccctaatttgatttctacgccctttccgcct
ccctcggcctcttttccgccgccagctacttccggcggagggatatattcgtatccttct
caagcctcgccgttccaccaccaaccccagtaccaccatcttcctttatacggtcccccg
tccaactctcgggaatttgcgaaccttcacccccagaggtccatgtcttatcccaccccc
accctccaaccccatgttcctttgcctagttccccccaccatcttaacttccaagccccg
gctagcccccaaaaccccaacaaccacggtgctcgtttgatggcgcttttgagtgctcca
ccttcaatgctggacattccaaatgagtccacaatgtcgatgccgcgaaccctccccact
tcttcaggctccgatttttccatgccacaatttgtgaacaatttgccatctgggcctgga
ttatcagtttcacatcaaggccctgtcacgcggatgttgagtagcaaactccccaaggga
aggcatttgaacggtgatcatttggtttatgatatagatatcaggttgccaggagaggtc
cagcctcagctcgaggttacacccattaccaaatatgggtcggacccaggactcgtagtg
ggcaggcaaattgctgtgaataaaacatacatatgctatggacttaagttgggggctata
agggtgcttaatatcaacacagccttaagatccttgctcaaaggcctagctcagagggtc
acagacatggctttctttgctgaggatgttcaccttttggctagtgcaagtgtcgatggt
cgtgtttatgtgtggaagatttctgaaggtcctgatgaagaagacaagcagcaaattact
gggagaattgtcactgctattcaaattactggagaaggagaatctgttcatccccgagtt
tgttggcattgtcataaacaagaagttcttgctgttgggatcgggaagcacattttgaag
attgacaccacgaaagtaggaaaaggagaaaaaatttcagctgacgaacctctaaaatgt
acagttgataagttgattgatggcatcgaatttgttggtagtcatgatggggaagtgact
gacttgtctatgtgtcagtggatgaccacccgtttggtatctgcttcagtagatggcacg
attaaaatttgggaagatcgaaatccactgccaatagcagttctccagcctcatggtgga
caacctgttaattctgtcgcatttttggccgtttctcatcgctcagaccatataatactt
attacagggggccctctgaatcgggaagtgaagatatgggtatcagcaagtgaggaaggt
tggttgcttcctattgatgctgaatcttggcgctgtgtgcagaaatttgaattaaagagt
tcagaggctcgaatagaagaagctttcttcaatcaagtgatagccttaccacaagctggt
cttcttttattggcaaatgccaaaaggaatgctatatatgcagtgcacttggaatacggt
cctaatcctgctgcaacacgcatggattacatagtcgaatttactgtcaaaatgccaata
cttagttttacaggaacaagcgagtcactacctaatggtgagcaagttgttcaggtatat
tgtgtccagacacaggccatccagcagtatgcattggacttgtcacagtgtctgccacct
gcaataggaaatgttgtgtatgagaagtcagactccaatgtttcacgcgaagcttcgttt
atcgaaggacttaccaatttggagtcttctggcattaaagcaacagaggtttctatgacc
agttcagcacctccatcatccatgtatggaagtggcttggagaatatacctgctgtgaga
tgccctgttaaccatgtttctgcagagtcgcccagtcgtcaggagtttggtccctcaagt
atggaaatcaaacccatgccttcacctgccattgctagtgatggtaatctttcttctgtt
gcttcaccttctctaccaatgagccccaggctgtccggaacactttctggttttagaaat
tcatcgagcaactttgagcctggtgttttgagtaatgatcggggtgtagagcctaaaatt
gttgaatatacagttgaccgacaaacggatgccattcacagtaactcgtcggacgtagct
tcatttgatggtgattcaagaaactatgaaaataagcattctcaagacgatatctccttg
gcactcaatcatccaataaaattcagacaccccactcatctggttactccttctgagata
ttgatggccaattcatcctccgaggtgatacacacaactgagacccaaatcgaggttgaa
caaaaaattcaagatgtggtaatgagcaatgatacaaggaattctgttgtagaggtaatt
gttatgggtgaaacgaaatttgatcaaaatattgatgatggatctcgagaagaacttcag
acttctctgtctgaaaagatggaaaatgtcttttgctctcaggcatctgatctaggaatt
gagatggcccgagaatgccgtgccatatcacctgaagcttatgtagtggaggaagatcgg
cagtttgatgggactggtggaactgaaacagttgcacaaccttctactgtagaagaagag
attcatgactccacaaaagatggtcccagcagggtcgttgatccctcaattcctgtgctg
gttccgcaacccgtaccaaataccaaagggaagaagcaaaagggaaagactgctcaagga
tctggcccatcttcaccctcaccatgtgcattcaattcggcagattcttctaatgaacca
ggcatcggctatagtactcctgtagaatcacaaatttattccatgcaagagatcctgcat
cagcttgtagctctgcaaaaagacatgcagaagcagatgacaacaatgattgctgtccct
gttaccaaagaaggcaaaagactcgaggcgtcagtgggtcgaaacatggagaaagctgta
aaactcaatgctgatgctttatgggctcggttgcaagaagagaacgcaaaacaggaaaag
gcgtctcgggagcgagcagaacaagtaacaaatatgatcagcagtttcttaaacaaagac
ttaccttcattgatagagaaaactgtgaaacgagaagtttcttcacttgggcaatctgtg
gctcgggctatcgttcccacaattgagaaagcaatatccacttctgttgtggagagcttc
cagaaaggggtgggtgataaagctgttaatcagctggaaaaatcaatcaactccaagctc
gaagctttagttgctaagcaaatccaatcacaatttcaaacttctggcaagcaagctctt
caggaaacactgaaatcaagtttggaagtttctatgatccctgcatttgaaatgtcgtgc
agggaaatgtttgagcaggttgattctgcgtttcagaaaggaatggttgaacatactgca
gcagctcagcagcagtttgaggcttcacaatcatcacttgcacttgttttgagggatgct
ataacttcagcatcatcaatttctcaaactttgagcaatgagttgcttgatggtcaaaga
aaattggtagatcttgctgttgcaggtgtaaattctaaagcagcaaatcctttgataaat
cagcttagcaatggtcctttgggtggtctaccggataagctcgaggttgatccaacaaaa
gagctttccagattgatagcggagcggaaatatgaggacgctttcgttgctgccttgcat
aggagtgatgttactgttgtatcatggttatgttttcatgttgatttgcctacgcttttg
gccgtgaatccactaccattgagccaaggggtactactctctcttctacagcaattgtcc
tgtgatatcagcaaggaaactcctcgaaaactaacttggatgagggaggttctaactgct
ataaatcctaccgacccagtgattatggtgcacgtacgtcccatctttcagcaagtatat
caaatattggaccaccatcgcagcattccaaccactacgggttccgaactttccaatgtt
cgcttgatcatgcatgtcatccattccatgcttatgggctctaaataa
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integrated database retrieval system
