Primulina tabacum: 142519912
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Entry
142519912 CDS
T11246
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
ptab03015
mRNA surveillance pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142519912
09122 Translation
03013 Nucleocytoplasmic transport
142519912
03015 mRNA surveillance pathway
142519912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142519912
03041 Spliceosome [BR:
ptab03041
]
142519912
03009 Ribosome biogenesis [BR:
ptab03009
]
142519912
03012 Translation factors [BR:
ptab03012
]
142519912
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142519912
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142519912
mRNA cycle factors
Stress granule specific factors
142519912
Spliceosome [BR:
ptab03041
]
Complex C
Other components
EJC/TREX
142519912
Ribosome biogenesis [BR:
ptab03009
]
Eukaryotic type
90S particles
Helicases
142519912
Translation factors [BR:
ptab03012
]
Eukaryotic type
Initiation factors
eIF-4
142519912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Helicase_RecD
Utp25_C
TniB
CMS1
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
142519912
NCBI-ProteinID:
XP_075479042
LinkDB
All DBs
Position
11:39550972..39555028
Genome browser
AA seq
408 aa
AA seq
DB search
MAAPAVQRGGGGRRAMGEDDANLVFETSKGVEPILSFDEMGIKDDLLRGIYNYGFEKPSA
IQQRAVLPIISGRDVIAQAQSGTGKTSMIALAVCQIVDTKSSEVQALILSPTRELAAQTE
KVILAIGDYINIQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRSIKL
LILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMSDPVRILVKR
DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMRENNFT
VSSMHGDMPQKERDAIMQEFRSGQTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcagctccggcggtacagagaggaggcggtgggcggcgagctatgggggaggacgac
gcgaatctggttttcgaaacttccaagggtgtggagccaattttgagcttcgacgagatg
gggataaaagatgatttactcagaggcatctacaactacggattcgagaagccctcggct
atacagcagcgagccgtgcttccgataatctccggccgtgacgtaatagctcaggcgcag
tctggtacgggaaagacttccatgattgcccttgctgtttgccaaattgtcgacaccaag
tcctccgaggtccaggctttgatattgtctcctacaagagagctggctgctcagactgag
aaagtaattttggctattggtgactatattaatattcaggcacatgcttgtattggaggt
aaaagtgttggcgaggatattagaaaattagaacatggagttcaagtggtgtcagggaca
cccgggagagtttgtgacatgattaagaggagaactctgcgaaccagatccataaaattg
ttaattctcgatgaatctgatgaaatgctgagtcgaggttttaaggatcagatttatgat
gtttaccgatatcttcctccagaactccaggttgtattgatatctgcaacccttccaaac
gaaatactggagatcacaagcaaattcatgtctgatccagttcgtattcttgtaaaacgt
gatgaattgactctggagggcatcaaacaattctttgttgcagtagagagagaggaatgg
aaatttgatactctctgtgatttgtatgatacccttaccattactcaggctgttattttc
tgtaacacgaagaggaaggtggattggctaacagcaaaaatgcgtgagaataatttcact
gtttcatctatgcatggagacatgcctcagaaagaaagagatgcaatcatgcaagaattc
cgctcaggtcaaactcgggttctgatcacaacagatgtttgggctaggggaattgatgtt
caacaggtttccctggtgattaattatgatcttcccaacaaccgagagctttacattcat
cgaatcggtcggtctggtcgttttggaagaaagggtgttgctataaactttgtgaaaagt
gatgacatcaaaatcttaagagacatagagcaatattacagtactcagattgatgaaatg
ccaatgaacgtggctgatctaatttaa
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