Primulina tabacum: 142520133
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Entry
142520133 CDS
T11246
Name
(RefSeq) uncharacterized protein LOC142520133
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ptab Primulina tabacum
Pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142520133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142520133
03041 Spliceosome [BR:
ptab03041
]
142520133
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
142520133
Spliceosome [BR:
ptab03041
]
Complex B
Other components
Prp19-related factors
142520133
Complex C
142520133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_19
PPR
Motif
Other DBs
NCBI-GeneID:
142520133
NCBI-ProteinID:
XP_075479244
LinkDB
All DBs
Position
12:complement(38074656..38080869)
Genome browser
AA seq
913 aa
AA seq
DB search
MAIPQELYPSEEDYLYEEEVLRNPNSVKLWWRYLIARVEAPFRKRAIIYERALKALPGSY
KLWHAYLRERLELVRNLPINHSQYQTLNNTFERALATMHKMPRIWIMYLQSLTRQKLISK
TRHTFDRALCALPVTQHDRVWEHYLVFVSQKGVPVETSLRVYRRYLKYDPSHIEEFIEFL
VNSELWQEASERLAGVLNDDQFYSLKGKTKHRLWLELCDLLTQHASEVSGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIRRGLLEKARDIFEEGMTTVITVRDFSVIFDAYSQFEESML
SIKMENMDLSDDEDNEENENEEKEKEEVDDRLDFEKLKKSIDTFWLKDDKDVDMRLARLE
YLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPH
TLWVAFAKLYESHRDVANARVIFDKAVQVNFKAVDHLASIWCEWAEMELRHKNFKVALDL
MRRATAEPSVEVKRRVAADGNKPVQIMLHKSLKLWTFYVDLEESLGSLESTRAVYERVLD
LRIATPQIIINYSMLLEDNKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSK
LERARELFEHAVEMAPAEAVKPLYLQYAKLEEDFGLAKRAMRVYDQATKAVPANEKMGMY
EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKVMCSKYAELERSLGEIDRSRALYKHA
SQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHYILPEYLMQKDQM
QTLDEAKDVLKKAGVDDDEMAALERQLVPTLNDAKVKDSGRRLGFVSGGMQNEGESVSNR
EDIELPEESDSEDDEKVEIAQKDVPTAVFGGLVRKREESDKDVEAPDSTISESKDNDAHL
GALERIKRMKRGA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcgataccacaggagctgtatccaagtgaagaggactacctttacgaagaagaagtg
ctccgcaacccgaatagcgtcaaactttggtggcggtatttaattgcccgcgtagaagcc
cctttcagaaagcgtgccattatttatgagcgagctctcaaggcgttgccaggaagctac
aagctttggcacgcatacctccgggaacgccttgagctagttaggaatctgcctattaat
cactcacagtaccaaaccttgaacaacacgttcgagcgagctctggcgacaatgcataag
atgcctcgcatttggataatgtatttgcagtcattgactcgtcagaagttgatttccaag
acgcggcacacctttgatagagctttgtgcgctctcccagttacccaacatgatagggtt
tgggaacattatttagtatttgtttcacagaagggtgtacctgttgaaacttcattgaga
gtgtacaggaggtacttgaagtatgacccgagtcatattgaggaatttattgagtttttg
gttaattcagagttgtggcaggaagcttcagagaggctggcaggggtgttgaatgacgat
caattttactctctaaaggggaagacaaagcacaggttgtggctggaattgtgcgacctg
ttgacacaacatgctagtgaggtatcagggttgaatgtggatgcaataattcggggagga
attaagaaatttacggatgaggttggcagactttggacatcattggcggattattatatt
aggaggggattactggagaaggccagagatatttttgaggaaggcatgactacagtgatt
acggtgagggattttagtgttatatttgatgcatattctcagtttgaagagagtatgttg
tccattaagatggaaaatatggatcttagtgatgacgaggataacgaggagaatgaaaat
gaagagaaggaaaaggaggaggtggatgataggttggattttgagaagttgaagaagagc
attgacacattttggttgaaggatgacaaggatgtggatatgaggttggcaaggttggag
tatctgatggataggagaccagagttagctaacagtgtgctcttgaggcaaaatcctcat
aatgtagagcagtggcaccggagggttaagctctttgaagggaaccccacgaagcaaatt
ttgacttacacggaggcagtgaggacagtagatccgatgaaggctgttgggaagccgcat
actttgtgggttgcatttgctaagttgtacgagagtcaccgagatgttgctaatgcccgg
gtgatttttgacaaggcagtacaggtcaattttaaggctgtggaccatctggccagtatt
tggtgtgaatgggcggagatggagctcaggcacaaaaattttaaggttgcactagatttg
atgcgtcgagctactgcagagccatcagttgaggtcaagagaagagtggctgctgatggc
aacaaaccggtgcaaattatgcttcacaagtctcttaagctttggacgttctatgtggat
ttggaggaaagcttgggtagtctggagtcaactcgtgcagtttacgaaagagtattagat
ttgagaatagccacaccccaaattattataaactattcaatgctcttagaagataacaag
tactttgaagatgcttttaaggtttatgagagaggtgtgaagattttcaaatacccccat
gtgaaagatatctgggtcacttacctttcaaagtttgtcaagagatatgggaaatcaaag
ctagaacgtgcacgagagttatttgagcatgctgttgaaatggcacctgcagaagcagtg
aaacctctgtatcttcaatatgcaaagctagaagaagactttggtctggctaaaagagca
atgagagtatacgatcaggcaacaaaagctgtccctgctaatgaaaaaatgggcatgtat
gaaatatacatagcccgtgctgctgaaatatttggtgtaccgaaaacgcgagagatttat
gaacaagcaatagaatctggcctccctgacaaagatgtcaaggtcatgtgttcgaagtat
gcggagcttgagagaagcctcggagaaattgaccgcagtcgtgcattatataaacatgct
tcacagtttgctgaccctagatctgaccctgacttctggaataagtggcacgagtttgaa
gtgcagcatggaaatgaagatactttccgagagatgctccgagttaaaagaagtgtttct
gcaagctatagccagacacattatatccttccagagtatttgatgcaaaaggatcaaatg
cagacccttgatgaggcaaaggacgtactaaagaaagctggtgtcgatgatgatgaaatg
gctgccctcgaaaggcagttagtccccactctcaacgatgccaaagttaaagatagtggt
agacgattaggatttgtcagtggggggatgcaaaatgaaggcgagtccgtatcaaatagg
gaggatatagagcttccagaagaaagtgattctgaagatgatgagaaggttgagatagcg
cagaaagatgttccaacagctgtgtttggaggtctggtgcggaaaagagaagaatccgat
aaagacgtggaagctcctgattcaactatttctgaaagcaaagataatgatgcccatctt
ggtgccttggagagaataaaaaggatgaagcgaggtgcatag
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