Primulina tabacum: 142520889
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Entry
142520889 CDS
T11246
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptab04131
]
142520889
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptab04147
]
142520889
Membrane trafficking [BR:
ptab04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
142520889
Exosome [BR:
ptab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
142520889
Exosomal proteins of bladder cancer cells
142520889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
TPR_COPA_B
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SPT8
NBCH_WD40
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Fis1_TPR_C
Beta-prop_At4g14310
Motif
Other DBs
NCBI-GeneID:
142520889
NCBI-ProteinID:
XP_075480165
LinkDB
All DBs
Position
12:4110775..4116547
Genome browser
AA seq
1213 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KTQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHHKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHSRQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILSAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDSVFYVKDRFLRSFEYSSQKDTQLIPIRRPG
SNSLNQGSRTLSYSPTENAVLICSDVDGGSYELYVVPKDSSGRGDTGQEAKRGVGGSAVF
VARNRFAVLEKSSNQVLVKNLKNEIVKKSVLPIATDAIFYAGTGNLLCRAEDRVVIFDLQ
QRNVLGDLQTPFVRYVVWSPEMDTVALLSKHSIVIADKNLVHRCTLHETIRVKSGSWDDN
GVFIYTTLTHIKYCLPNGDSGIIKTLDVPVYITKIYGNTIFCLDREGKNRPIIIDSTEYI
FKLSLLGKRYDQVMSMIKKSELCGQAMIAYLQQKGFPQVALYFVKDERTRFNLALESGNI
EKALESAKKIDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFGRLSFHYLITGNLEKLSK
MMRIAEVKNDVMGQFHDALYIGDVQERVKILKNAGHLPLAYVTAKVHGLNDIAEGIAGEL
GDNVPSLPGKAELLTPPSPVLCAGDWPLLMVSKGIFEGGLDDTVKDGHEDYEEAADADWG
EGLDVGEVDNMQNGDINALLEDDDKEENEEGGWGLEDLDLPADADTPRTAPHARSSVFVA
PTPGIPVGQIWAQRSSLAAEHAAAGDFDTAMRLLSRQLGIRNFSPLKSLFIDIHMGSHTY
LWAFSSAPVISVAVERGWNESASPNVRSPPALAFNFSQLDEKLKAGYKSTTAGKFSEALR
LFQSILHTIPLIVVETRREVDEVKELIIIVKEYVLGLKMELQRRELKDDPVRQQELAAYF
THCNLQLPHTRLALLNAMTVCYKAQNLSTAANFANRLLETNPSNENQARTARQVLQAAGR
NMKDATQLKYDFRNPFVLCGATYVPIYRGQRDITCPYCSTHFVPSQEGQLCTVCDLAVVG
SDASGLRCSPTQR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgaagttcgagacgaagagtaatagagtaaaaggcctgagctttcacagcaag
aggccatggatcttggcgagtctccacagcggagtgatccagctctgggattaccggatg
ggcaccctcattgatcggtttgacgagcacgatggacccgtccgtggcgtccattttcat
aagacgcagccgcttttcgtgtccggaggtgatgattacaagatcaaggtgtggaattat
aaattgcacaggtgtttatttacccttctgggtcatcttgattatatccggactgttcaa
tttcatcacgaatatccctggattgtaagcgctagtgatgatcaaactattagaatatgg
aattggcagtcacgaacttgcatttctgtattgactgggcacaaccattatgtaatgtgt
gcatcgtttcaccacaaagaagacttggttgtgtctgcctccttggatcagacagtacgt
gtttgggatatcggtgccttgaggaaaaaaacagtatctcctgctgatgacatattgcga
ttgtctcaaatgaacacagacttctttggtggtgttgatgctgttgtcaagtatgtctta
gaaggccatgatagaggggtgaactgggcttccttccatcccactctccctctgattgtt
tccggagcagatgaccgccaagtgaaaatctggcgcatgaatgatactaaagcttgggag
gtggatacattgagaggccacatgaacaatgtgtcatgtgttttgttccattcaagacaa
gatatcattgtctccaactcagaggacaagagtatcagagtttgggatgctacaaaaaga
accggtctacagacttttcgtagggaacatgatagattctggattctttcagcccatcct
gagatgaatcttctggctgctggtcatgatagtggcatgattgtttttaagttggagaga
gagcgccctgccttttccgttagtggtgattcagtcttctatgtcaaggatcggtttcta
cggtcctttgagtattcatctcagaaagatactcagctgataccaattcgccgacctggt
tctaatagtttaaatcaagggtctcgaactctttcttacagtcctaccgagaatgctgta
ttgatttgctctgatgtggatggcggatcatatgaactctacgttgttcctaaagacagc
tctggaagaggtgacacaggtcaagaggcaaaaagaggtgttggaggatcagcagttttt
gtggctcgaaataggtttgctgtgctggagaagagcagcaatcaggtcttggtcaagaac
ctgaaaaatgaaatagtgaaaaagagtgttcttcctattgctactgatgctatattctat
gcgggcaccggaaatcttctctgcagggctgaggacagggttgtgatctttgatcttcaa
caaaggaatgttcttggagatcttcaaactccatttgttaggtacgtggtctggtctccg
gagatggacactgttgctttattgagcaagcactctattgttattgctgataaaaatctc
gtgcaccgctgtactcttcacgagaccattcgtgtcaagagtggatcatgggatgataat
ggtgtcttcatctatactacactcacacatatcaagtattgtcttccaaatggggacagt
ggaattatcaagacgttggatgtgcctgtatatatcacaaaaatatatgggaacactata
ttttgcctggacagagaggggaagaaccgtcctatcattatagattcaacagaatatatc
tttaagttatccctgcttgggaagagatatgatcaagtgatgagcatgataaaaaaatct
gaactatgtggacaggccatgattgcttatctgcagcagaagggtttcccacaagttgct
ctttactttgtgaaggatgaaagaactcgatttaacttagcccttgaaagcggcaacatc
gaaaaagcccttgaatctgctaagaagatcgatgagaaagaccactggtacaggctaggg
gtggaggcccttcgtcagggaaatgctgggattgttgaatacgcttaccaaaagaccaaa
aactttggtaggctgtcatttcattatctgataactggtaatcttgaaaaattgtccaaa
atgatgaggattgctgaggtcaagaacgatgttatgggccagttccatgatgcactatat
attggtgatgtgcaggagcgagttaagattctgaaaaatgcaggccatctccctcttgcc
tatgtcacagccaaagtccatgggctcaatgacattgcggagggtatagctggggaactt
ggggataatgttccttctttacctgggaaagccgaactgttaacgcccccgagtccggtc
ttatgtgctggtgattggccattgttaatggtcagtaaaggaatttttgaaggtggcctt
gatgatactgtcaaagatggacatgaggattatgaagaggccgcagatgctgattggggc
gagggcttggatgtcggtgaggtggacaatatgcagaatggggacataaacgcattgctg
gaggatgatgataaggaggagaatgaagaaggaggatggggtctggaggacttggatctg
cctgctgatgctgacactccaagaacagctccacatgcacgttcttctgtatttgttgcc
ccaacccctggtattcccgtaggccagatttgggcccaaagatcgtcccttgccgctgaa
catgctgctgcgggagactttgacacagcaatgcgcctattgagccgtcagttagggata
aggaatttctctcctttgaagtctctttttattgacattcacatgggcagtcacacttac
ctatgggccttctcctcggctccggtgatatcagtggcggtggaaagaggttggaacgag
tcagcaagtcccaatgtgcggtccccccctgcacttgcgtttaatttctctcaattagat
gagaagctcaaggctggttacaagtctacgactgctggaaagttttctgaagctcttaga
ctttttcaatctattcttcacacaatcccactgattgtggttgaaacgcggagagaagtg
gacgaagttaaggagttgattatcatagtgaaggagtatgttttgggtttgaagatggag
cttcagaggagggaattgaaggacgacccggttcgtcagcaggaacttgctgcctatttc
acccactgcaacctccagcttccccacacacgactcgcattattgaatgccatgactgtt
tgctataaggcccagaatctgagcactgctgccaactttgccaatcgacttctggaaacc
aacccaagtaacgaaaaccaagctcgaaccgctcgacaggttctgcaggctgccggaagg
aatatgaaagacgctacacagctgaaatatgatttcagaaacccattcgtgttgtgtgga
gccacgtatgtcccaatataccgaggccagagagacataacttgcccctactgcagcacg
cacttcgtcccatctcaggaaggtcagctttgcactgtttgtgaccttgcagtggtcgga
tctgatgcatccggcttacgctgttctcctacgcaaagatga
DBGET
integrated database retrieval system
