Primulina tabacum: 142521094
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Entry
142521094 CDS
T11246
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142521094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142521094
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142521094
mRNA degradation factors
5'-3' decay
Lsm complex
142521094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
142521094
NCBI-ProteinID:
XP_075480400
LinkDB
All DBs
Position
12:complement(39120900..39123551)
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGIFRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLDKEELPSHMTCVSPAEIRRAKKAERESSELKGMMKQ
RMDFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggcccggaagatatttacctctccacatctcttgccagctatcttgac
aagaaacttcttgtattacttcgagatgggaggaaactattagggatttttcgttccttc
gatcaatttgctaatgcagttttggaaggcgcatgtgagcgtgttattgttggcgatctg
tattgtgacattccattaggtctgtatgtgattcgtggagaaaatgttgtgttaattggg
gagctggacctggacaaagaggaacttccttcacacatgacttgtgtttcacctgcagag
ataagaagggcaaagaaagcagaaagggagtcttcagagctcaaggggatgatgaaacaa
aggatggattttcttgatatggattga
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