Primulina tabacum: 142521722
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Entry
142521722 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142521722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142521722
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142521722
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142521722
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
142521722
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH_12
zf-CCCH_2
zf-CCCH
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
142521722
NCBI-ProteinID:
XP_075480985
LinkDB
All DBs
Position
13:35051524..35057774
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AA seq
676 aa
AA seq
DB search
MDDAEGGLSFDFEGGLDPGPTQPTASVPVIQSLPDPAAGSAAAALNANNPSNAAVPAAEG
IGGGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHT
NEDIKECNMFKLGFCRNGPDCRYRHAKLPGPPPPVEEVLQKIQQLASYNYGNSNKFFQNR
NTNYTQPTDKPQFSQGPNDTNQLEKINTTGDGSVHQQPQLGQQLQQLGGQAQLQNIPNGQ
QNQANRTATPLPQGTSRYFVVKSCNVENLELSAQQGVWATQRSNEAKLNEAFDSVENVIL
IFSVNKTRHFQGCAKMTSRIGGSVSGGNWKHAHGTTAHYGWNFSLKWLKLCELSFNKTRH
LRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSDLMAVSLAAESKREEEMAKGVN
LENGNENSDIVPFEDNEEEEEEESEEEDESPGQAFGVQGRGRSRGMMWPPQIPLARGARP
FASVRGFPPNMLRGDGFSYRAMNPDGFPVPDIFGMAAPRGFGPYGPRFSGDFVGPAPGMM
FPGRPSGGFGTVMGPRAPFMGIGAATMTRAGRPVGMPLFYPPPQSQLPQNSXIRSENSDQ
VKGPEIVGSGGGSEDEGRHQQSGKTQQDDHFSAGNYRNDESGSEDEAPRRSRHGERKKKS
RKWEVDFATISDEPIH
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgcagaagggggtttaagctttgacttcgagggcgggttggacccggggccc
acacaaccgactgcatccgtacccgtgatccaatcattgccggaccccgcagcgggttcc
gccgccgccgccctcaatgccaataacccttccaacgctgccgtgccggcggcggaagga
attggcggtggaagacgtagcttccggcagacggtatgtcgccactggttgcgatcgttg
tgcatgaaaggtgatgcttgtgggttccttcatcagtacgataagtcgcggatgcccgtt
tgccggttctttcgtctgtacggagagtgccgagagcaggattgcgtgtataagcacacg
aatgaggatatcaaggaatgcaatatgtttaaattgggattttgtcgaaatggcccagat
tgtaggtacaggcatgcaaagctgcctggacctccgcctcctgtggaagaagttctccag
aagatccagcaattggcttcttacaactacggaaactcaaacaaattttttcaaaaccgt
aacactaattatacccagccaacagataaacctcagttttcacaaggtcccaatgataca
aatcagttggaaaaaattaacaccacaggggatggtagtgtgcatcaacaaccacagcta
ggacaacagcttcagcaactgggcggacaagctcaactacagaatattcccaatggccag
caaaatcaagctaataggactgctacacctctgccacaaggaacatctaggtacttcgtg
gtcaaaagttgcaatgttgagaatctggaactctctgctcaacaaggtgtatgggcaact
caacgaagcaatgaggctaaacttaatgaagcttttgactctgttgagaatgtcattttg
attttttcagtcaataagactagacattttcagggctgtgcaaagatgacatccagaatt
ggtggctctgtaagtggaggaaactggaagcatgcacacggaacaactgctcattatgga
tggaatttttctctcaaatggttaaagctctgtgaactatccttcaacaaaactcgccat
ttgagaaacccatacaatgagaacttacctgtgaagataagtagagattgccaagaactg
gagccctctattggtgagcagttggcatccttgctctacctagagccagatagtgatctt
atggctgtctctcttgcagcagaatcaaaacgagaggaggagatggcaaagggagtaaac
cttgaaaatgggaatgaaaactcggatattgtgccctttgaagataatgaggaagaggag
gaggaagaaagtgaagaagaagatgaaagccctggacaggcctttggagttcaaggcagg
ggaaggagtagaggaatgatgtggcctcctcaaatccctcttgcacgtggagctcggcct
tttgcaagtgttcgaggttttcctcctaacatgttgaggggtgatggattttcgtatcga
gctatgaatcctgatggttttcctgtgcctgacatttttggtatggctgctccccgcggg
tttggaccatatggtcctaggttctctggtgattttgtaggtcctgcccctggtatgatg
ttccctggtcgaccttcaggtggatttgggacggttatgggtccaagggctcctttcatg
ggtattggtgctgctaccatgactagagccggtaggccagttggtatgcctcttttttat
ccaccacctcaatcacaacttccccaaaattctnntatcaggagtgagaattcagatcaa
gttaagggtccagagattgtaggctccggcggtggatcagaagatgaaggccgacatcag
cagagtggtaaaactcaacaagatgatcatttcagtgctggaaactacaggaatgatgaa
agcggcagcgaagatgaggctccaagaaggtctagacatggagagagaaagaagaagagt
cgtaaatgggaggtggattttgccaccatctccgatgaacccatccactga
DBGET
integrated database retrieval system
