Primulina tabacum: 142522421
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Entry
142522421 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: cullin-4-like
KO
K10609
cullin 4
Organism
ptab Primulina tabacum
Pathway
ptab03420
Nucleotide excision repair
ptab04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
142522421
09124 Replication and repair
03420 Nucleotide excision repair
142522421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ptab04121
]
142522421
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142522421
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptab04147
]
142522421
Ubiquitin system [BR:
ptab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
142522421
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
142522421
TCR (transcription coupled repair) factors
Cul4-CSA complex
142522421
Exosome [BR:
ptab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
142522421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
Cpn60_TCP1
ORC5_lid
Motif
Other DBs
NCBI-GeneID:
142522421
NCBI-ProteinID:
XP_075481912
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All DBs
Position
13:34907172..34916420
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AA seq
842 aa
AA seq
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MSQPTASTSASASASAKVCKRSHPYSSSPTATALGGGAASIFPAMKKAKSQAVASSIEGN
KNGQQQITPHVHFSESTMIENDPNDVVLEATAASGSFGVRVGAGGGGSTANLARKKATPP
QPTKKLVIKLVKAKPTLPINFEENTWATLKSAISAIFFKRPDPCDLEKLYQAVNDLCLLK
MGGSLYQRIEKECEAFINAALQSLVGQSEDLVVFLSLVEKCWQDFCDQMLMIRGIALYLD
RTYVKQTPNVCSLWDMGLQLFRKHLNLSSEVEHKTVFGLLKMIESERLGEAIERTLLNHL
LKMLTALGIYPESFEKPFLECTSEFYAAEGVKYMQQSDVPDYLKHVEMRLQEEHERCLLY
VDASTRKPLVATAERQLLERHISAILDKGFTMLMDGKRIEDLQRMYLLFSRVNALESLRQ
SLNQYIRRTGQTIVIDEEKDKDMVSCLLEFKADLDTIWEESLSKNEAFSNTIKDAFEHLI
NLRQNRPAELIAKFVDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLA
KRLLLGKSASIDAEKSMITKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKL
PSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQISLGHCV
LKAEFPKGRKELSVSLFQTVVLMLFNDAKNLSFQDIKESTGIEDKELRRTLQSLACGKIR
VLQKIPKGRDVEDDDSFVFNDEFTAPLYRIKVNAIQMKETVEENASTTERVFQDRQYQVD
AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQVYNY
LA
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagcccaccgcgtccacctccgcctccgcctccgcctctgctaaagtctgtaaa
cgctcacatccttattcttcctctccgaccgcaaccgcattaggcggcggcgcagcttca
attttcccagctatgaagaaggccaagtcacaggctgttgcgtcctcaattgaaggtaac
aagaacggacagcagcagattactcctcacgtacacttctctgaatccacaatgatcgaa
aatgatcccaacgacgttgtattggaggcaacggcggcgtccggatcttttggcgtccgc
gttggcgctggcggaggaggaagtaccgctaatcttgctaggaaaaaggccacgcctccg
cagcctacgaaaaagcttgtgattaagctcgttaaagctaaaccgacactgccgattaat
ttcgaagaaaatacatgggccacgctcaagtcagctatcagtgccatattttttaaacgg
ccagatccttgtgacttagagaagctatatcaggctgtcaatgacctttgcctgctcaag
atgggggggagtctttatcagcgaattgaaaaggagtgtgaagctttcattaatgctgct
ctacaatctttggttggtcaaagtgaagatctggttgtttttctatctctagttgagaaa
tgctggcaggatttttgtgatcaaatgctgatgattcgtggcatagctctatatctcgat
agaacatatgtgaagcaaacaccgaatgtgtgttcattgtgggacatgggtttgcagctt
ttccgtaaacatcttaatctatcttcagaggtcgagcacaaaactgtatttggtctgtta
aaaatgattgagagtgaaagattaggtgaagcaattgaaagaactctccttaatcatctg
ttgaagatgttgactgcactggggatttacccagaaagttttgagaagccatttcttgaa
tgtacgtctgagttttatgctgctgaaggagtcaaatacatgcagcagtcagatgttccg
gattatttaaagcatgtcgagatgaggttgcaagaagaacatgaaagatgcttactttat
gtagacgcaagtaccagaaagccattggtagctacagcagaaaggcaactacttgaacgt
catatatctgcaattctcgataagggtttcacgatgctgatggatgggaagcgtattgaa
gatcttcaaagaatgtatttacttttttccagggttaatgcccttgaatcgttaaggcaa
tctcttaatcaatacatccgaagaacaggccaaaccattgtcattgacgaagagaaggac
aaagatatggtgtcctgcttgctggaatttaaggcagaccttgatacgatatgggaagaa
agcttatctaaaaatgaggcatttagcaatacaataaaggatgcatttgagcatctcatt
aatctccgtcagaaccggcctgctgagttaattgccaagttcgtggatgagaagctccga
gctggaaataaaggtacatcagaggaagaattggagggtacacttgacaaagtcttggtt
ttgttcagatttatacagggtaaagacgtatttgaagcattctataaaaaagatctcgct
aaaaggctcttgttgggtaagagtgcttctatcgacgcagagaagtctatgattaccaag
ttgaaaactgagtgtggcagtcagttcactaacaaacttgaaggaatgttcaaggatatt
gaattgtcaaaggaaattaatgaatcattcaagcaatcatcccaagctcggacaaaactc
ccctctggaattgagatgagtgtccatgtcttaacaacagggtactggccaacctatcca
cccatggatgtcaggctgcctcatgaactcaatgtttatcaggatatttttaaggagttt
tatttgagcaagtacagtgggaggcgactaatgtggcaaatttcattgggtcattgtgta
ctaaaagcagaatttccaaaaggtagaaaggagctttcagtttctctatttcagactgtt
gtgttgatgctgtttaatgatgccaaaaaccttagctttcaagatatcaaggaatccact
ggtattgaagataaagagctgcgaaggactttgcagtcccttgcgtgtggaaaaattcgt
gttcttcagaaaatccctaaagggagagacgtggaagatgacgactcctttgttttcaac
gatgaatttactgcacctctatatcgtatcaaggtaaatgccattcagatgaaggaaaca
gtagaggagaatgccagtacgacggaacgagtcttccaagaccgccaatatcaggttgat
gcagctattgttcggattatgaagacaagaaaagttttaagtcacaccctcctgataact
gaactctttcaacagctcaagtttcccataaaaccagctgacttgaagaaaaggattgaa
agtctcattgacagagaatacctggagcgcgacaaaaacaacccacaagtgtacaactac
cttgcgtaa
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