Primulina tabacum: 142523397
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Entry
142523397 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC142523397
KO
K26109
nuclear exosome regulator NRDE2
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142523397
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
142523397
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
142523397
NCBI-ProteinID:
XP_075483295
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All DBs
Position
13:complement(31084084..31093698)
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AA seq
1163 aa
AA seq
DB search
MEEGEEPSSNATSLFPAFLPSKRPQIPSAAVADADTTSAAAAVNWLQNSSFTTDLSVIND
AVSKYELPYDALDDEEQVPEEIDANKRRDQYEMVASSASDEDASEGEGRKKRRKQRRRSE
ARPSSYDYPAALSSSRKPGVQKWASSTTGEKEYFFDSRGDRDNLAFGSVYRMDVARYKLY
NSKEVSGYSNFRQYTRVGGIDGDEDIDWLDTKLKSGGRYWSAKYAAVERHKNLKRVRILV
PAKPIVNMVTDFIPLSSDEDSGSAPVLNVTVIEESWEDEVLRKTKEFNTMTREHPQDESV
WLAFAEFQDKVSRMQPHKGARLQSLEKKISILEKATEFNPDSEDLLLALLNAYQTRDSSD
VLIRRWEKILAFNSGSYKLWREFLRVVQGEFSRFKVSEMRKFYTSAIQALGGACIKQHRQ
VLALMAFPSGNETHVDPSIVQLELGFVDIFLSLCRLEWQAGYQELATALFQAEIEYTLFS
PSLVISEQSKQRLFEHFWSSNGARIGEDGAFGWSTWLEKEEEQRQRLISEETSTTAEEGG
WTGWFDPISQNKEIDEFPLSNAENDVIVGELDDESDARDVEQKDDIEFLLKELGIDAASE
ADIKVKDTRTWTNWSKAELARDFDQWMPLHSKSDPNSCNDDTADDEDNEQLFRTILYEDV
CDYLFSLKSEEARLSLVAQFIDFYEGRIAQWWTCTNSPSWVEKTSSLETLPYSVLENLKR
VHDLLTETRTNSRSISLELLMHSSKDKNVRSDTMKFLRNATLLCLKAFPQNYMLQEAALV
AEELSNTSTNSTGSSVTPCRALAKNLLKNNRQDVLLCGVYAQREALFGNIDHSRKVFDMA
LTSVEGLPQDARSKAPLLYFWYAEMELSNDNTESTSRATHILSCLGSGARYDPFNGQPSA
LQKLRARQGFKDQIKMLGSVWARGIIDDPSAAVICSAALFEELTSGWTSALEILENSFAM
VLPERRRQSRQPEFLMNYYARMLCRNHVELKISKVWEVIVKGLQIYPFNPPLHYALVEIS
NLYTSPNKLRWTLDDYFHKKPSVITWLYALSFEMSAGGSKHRIRGLFERALEDGKLQNLV
ILWRCYLEYEMNIACNFAAAKRVFFRAIHACPWSKKLWLDGFLKLDSILSVKELSDLQEV
MRDKELNLRTDIYEILLEDDMDV
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaggagaggaaccctcctccaatgcgacgtcgctcttccccgcttttctcccc
tctaagcggccccaaattccctctgcagcggtagccgacgccgacactacatccgcagcc
gccgccgttaattggttgcaaaactccagcttcactaccgacctatccgtcataaacgat
gccgtttcaaaatatgagcttccgtacgatgcactcgacgatgaagaacaagtacctgaa
gaaattgacgccaataaacggcgggatcagtacgagatggtggcttcctcggcttctgat
gaagatgcgtccgaaggtgaaggtcggaagaaaaggagaaagcagaggaggaggagtgag
gctcgtccatcttcatatgattatccagctgctctctcttcttcgagaaaaccgggtgtt
caaaaatgggcttcttctactactggcgagaaagagtatttctttgattctcgtggggat
cgcgataatttggcttttggttcagtttacagaatggatgttgctcgttacaaactttat
aactctaaggaagtttctgggtacagcaattttcgacaatatactagagttggaggtatt
gatggggatgaggacattgattggttagatacaaagcttaaatctgggggtcggtattgg
tctgcgaagtatgctgctgtcgaacgtcataagaacctgaaacgagtgagaattcttgtt
cctgccaagcctatagtgaatatggttactgattttattcccttatcatcagatgaagat
tcaggtagtgcaccagttttaaatgtgacagtcattgaagagtcttgggaagatgaggtg
ctgcgaaaaacaaaggagttcaatacaatgacaagggaacacccgcaggatgagagtgtt
tggttagcatttgcggaatttcaagataaggtttctagaatgcagcctcataaaggtgct
cgtttacagtctctagagaagaaaatcagcattttggagaaggcgactgagtttaaccct
gatagtgaagatttgttacttgcacttttgaatgcttatcaaactagagatagctctgat
gtcttaattaggagatgggaaaagatactagcattcaattcagggagttacaagctgtgg
agagaatttttgagggttgttcagggtgaattctccagatttaaggtttctgagatgagg
aagttttacacaagcgcaatccaagccttaggtggtgcttgtatcaagcagcataggcag
gttctcgctttgatggcatttccatctggcaatgaaactcatgttgatccgtcaattgtg
caattggaacttggttttgttgatatatttcttagtctttgccgcctagagtggcaagca
ggttatcaggagttggctactgctttatttcaggcagagattgaatatactttgttttct
ccctctttagttatttctgaacaaagtaaacaaagactgtttgaacacttttggagtagt
aatggtgccagaataggggaagatggtgcatttggatggtcaacatggctagagaaagaa
gaagaacagaggcagagacttattagtgaagagacctcaacaacagctgaagagggtggc
tggacaggttggtttgatccgatatcacagaataaggaaattgatgaatttccactgagt
aatgctgagaatgatgtcattgttggggagttggatgatgaatctgatgctagagatgtt
gagcagaaggatgatatcgagtttctgcttaaagaacttgggattgatgcagcttctgaa
gctgatatcaaggtcaaagatacgagaacatggactaattggtcaaaggcagagttggcc
agagattttgatcagtggatgcctcttcattcaaaatctgatccgaattcatgtaatgat
gatacagctgatgatgaagacaatgagcaactattcaggacaatattatatgaagatgtg
tgtgattacctgttctcgctaaaatccgaggaagcccggttatctctcgttgcccagttt
atagatttctatgaagggagaatagctcaatggtggacttgtacaaacagtccaagttgg
gttgaaaaaacctctagtttggagactcttccgtattctgttttagagaacttgaaaaga
gtgcatgatcttctaacagaaacaagaaccaactcgaggagtatcagtttggagcttctt
atgcacagttccaaggacaaaaatgtgaggagtgacaccatgaaattccttcgcaatgcc
acgttgctttgtttaaaagcttttcctcagaattacatgttgcaagaagctgctctcgta
gctgaagagctatcaaacacgagtactaattcaaccggcagttctgtaaccccgtgtcga
gctctggcaaaaaatttattgaaaaataatcggcaggatgtattgctctgcggtgtttat
gcacaaagagaagcacttttcggcaacattgatcattccaggaaggtttttgacatggca
ttaacatctgtcgaggggcttccacaggatgctcgttcgaaggctcctcttttatatttc
tggtatgctgaaatggagctatcaaatgataatactgagtcaacatcgcgtgcgacacat
atcttgtcttgcttaggcagtggagcaagatatgatccatttaatggtcaaccatcagct
ttgcaaaagcttagagcccgccaggggtttaaagatcaaataaaaatgctaggttcagtg
tgggcacgtggtatcatagatgatccttctgctgctgtcatttgctcagcagctttattt
gaagagctgacttctggatggacttctgctctggaaattttggaaaattcgtttgcaatg
gtgcttccagagagaagacggcaaagtcggcaacctgaatttttgatgaactactatgcg
aggatgctttgtaggaatcatgtggaacttaagatttcaaaagtatgggaagttatcgtg
aaagggttacagatttatccctttaatccacctctacactatgctttggttgaaatcagc
aatctttatacttcacccaataaactgcgatggactttggatgattactttcacaaaaaa
ccatctgtgatcacatggctctatgcattgtcatttgagatgagtgcagggggctccaaa
cacagaatacgtggactttttgaaagggcgcttgaggatggcaaattgcagaatttggtg
attctctggcgttgttatctggaatatgagatgaacatagcatgcaactttgctgcagct
aaaagagttttctttcgtgcaatacatgcttgtccctggtctaaaaagttatggctcgat
ggattcctcaaactcgattccatactgagcgttaaagaactctccgatctccaggaagtc
atgcgggacaaggaactcaatttgaggactgatatatatgagattttattggaagatgat
atggatgtgtag
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