Primulina tabacum: 142523968
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Entry
142523968 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 24-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ptab
Primulina tabacum
Pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142523968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptab03041
]
142523968
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142523968
Spliceosome [BR:
ptab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
142523968
Complex B
142523968
Complex C
U2 SnRNP specific factors
142523968
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
P-loop_SecA
ERCC3_RAD25_C
HAMP_PhoQ
Motif
Other DBs
NCBI-GeneID:
142523968
NCBI-ProteinID:
XP_075483813
LinkDB
All DBs
Position
2:1954871..1957731
Genome browser
AA seq
637 aa
AA seq
DB search
MSKRKFGFEGSGINRQATYNFDRSQPSQRLYVPPSARGSAGDEDADLDNIDYAEDRDAPD
YAVTDGKNGFSAAEEDEIDHLDAFMEGLQEEMKAAPPSKTKEKLDKYRDDVEDDPMESFL
SSKKDLGLQLAADALHAGYNSDEEVYAAAKAVDSGMVEYDSDDNPIIVDKKKIEPIPELD
HSSIDYASFNKDFYEEEKECISGTSELDAIXYKKSLAIRVSGFDVPRPIKTFEDCGFSLE
LMKAIAKQAYEKPTPIQCQALPIMLSGRDMIGIAKTGSGKTASFVLPMIVHIMDQPELEK
EEGPVGVICAPTRELAHQIYSEAKKFSKAHGIRVSAVYGGMSKLDQFKELKAGCEIVVAT
PGRLIDLIKMKALTMLRATYLVLDEADRMFDLGFELQIRSIVGQIRPDRQTALFSATMPR
EVEKLAREILSDPVRVAVGEVGMANEDITQVVELIPSDVEKFPWLLEKLPRMIDEGDVLV
FASKKSTVDEVESKLAQEGFKVAALHGDKDQASRMEILQKFKSGAYHVLIATDVAARGLD
IKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ
NVSMELMDLAMNDGRFRSKRDAARKGGTDLFCMIGVY
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacggaaattcggattcgaaggctccggcatcaatcgtcaagccacttacaac
ttcgaccgatcccaaccttcgcagagactctacgtgcctccatctgcccgtggaagcgcc
ggtgacgaagacgccgacctcgacaacattgattacgccgaagaccgcgacgcaccagac
tatgctgtcactgacggcaaaaacggcttctctgccgccgaggaagacgagattgatcat
ctggacgcttttatggaaggattacaggaggagatgaaggcagcaccgccatctaagacg
aaggagaagctggataagtacagggacgacgtggaggatgatccaatggagagttttctg
agttcgaagaaggatttaggtcttcaattagctgcggatgcgcttcacgcggggtataat
tcggatgaagaggtttatgcggctgctaaggccgtggattccgggatggttgagtacgat
tctgatgataatcctattattgtcgacaagaagaagattgagccaattcccgagcttgat
catagctcgattgattacgcgtcctttaataaggatttctacgaggaggagaaagaatgt
atttcaggcacgagtgagctggatgctatctagtacaagaagagcttagcaatacgtgta
tcaggttttgatgttccacggccgattaagacttttgaagattgtggtttttctttggag
ctaatgaaagccatagcaaaacaagcatatgagaaaccaacaccaatacagtgtcaagct
ttacctatcatgctttcaggaagagacatgattggtatagcaaaaactggttctgggaag
actgcttcatttgtgcttcccatgattgtccatatcatggatcaacctgaacttgagaaa
gaagaaggtccagttggagtaatatgtgcacccactagggagttggctcatcaaatatat
tctgaagctaagaaattttccaaagctcatggcatccgtgtctctgcagtgtatggggga
atgtccaaactcgaccaattcaaggagctaaaagcaggatgtgaaatagttgtggctact
ccaggaagattgatagatttgataaaaatgaaggctctgacaatgttgagagcaacatat
ttagtgctagatgaggccgatagaatgtttgaccttggttttgagctacagataaggtct
atagtaggtcaaatcaggccagatcgtcagacagcactcttttcagctactatgcctcgg
gaagttgaaaaacttgctcgagagattctctctgatcctgttagagtcgctgttggagag
gtgggtatggcaaacgaggatattacccaagttgtggaattaattccctctgatgtggag
aagtttccatggcttcttgaaaagcttcctagaatgatagatgaaggtgatgttttggtt
tttgcttcaaaaaagtccacagtggatgaagttgaatcaaaattggctcaagagggtttt
aaagttgcagcacttcatggtgacaaagatcaggcttctcgtatggagatattgcagaag
ttcaaatctggagcttaccatgttctgattgcaactgacgttgctgctcgtggtcttgac
atcaaatcaattaaatctgtggtcaattttgacatagctaaagacatggacatgcatgta
catcgcattggaaggacgggtcgtgcaggggacaaagatggtactgcatatactcttgtt
acacagaaggaggcgagatttgctggtgaacttgtcaacagtttgatagctgcgggtcag
aatgtgtccatggagctgatggatctggctatgaatgatggaaggttcagatccaaacgg
gatgctgcgcggaaaggaggtacagatcttttttgtatgataggtgtatattaa
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