Primulina tabacum: 142524244
Help
Entry
142524244 CDS
T11246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
ptab03015
mRNA surveillance pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142524244
09122 Translation
03013 Nucleocytoplasmic transport
142524244
03015 mRNA surveillance pathway
142524244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142524244
03041 Spliceosome [BR:
ptab03041
]
142524244
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142524244
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142524244
Spliceosome [BR:
ptab03041
]
Complex C
Other components
EJC/TREX
142524244
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142524244
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
142524244
NCBI-ProteinID:
XP_075484247
LinkDB
All DBs
Position
14:30414810..30419822
Genome browser
AA seq
428 aa
AA seq
DB search
MGETKENDAYEEELLDYDDEDEKVTDSVTAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaccaaggagaacgacgcttacgaagaggagcttctcgactacgacgacgaa
gacgagaaggtcaccgactccgtcaccgccaaagtcaacggcgagtccgccaaaaagggt
tatgtaggcattcacagttcaggattcagagatttcctcttgaagccagaacttttacgg
gctattgtggattctggatttgagcatccgtccgaagtgcaacacgaatgcatacctcaa
gctatcttgggaatggatgttatttgtcaagcgaaatccggtatggggaaaactgctgtg
tttgttctctcaacgttgcagcagattgaacctattgcaggtcaagttgctgccctcgtt
ctgtgtcatacaagggaattggcttaccagatctgccatgaggttgagcggtttagtaca
tatttacctgatatcaaagttgctgttttttatggtggtgtcaacattaaaatccacaag
gatctcttgaagaatgaatgtcctcacattgtcgtgggaacaccaggaaggatacttgct
ctcgcaagagacaaggatctttctttgaggaatgtgaggcattttattctggatgaatgt
gataagatgctcgagtcccttgatatgagaagagatgttcaggagatctttaagatgaca
cctcatgataaacaagttatgatgttctcagccacactcagcaaggagattcgaccggtt
tgcaagaaattcatgcaagatccaatggaaatctatgtggacgatgaggccaaattgact
ctccatggtcttgtacagcactacatcaaattaagtgagctggagaagaaccggaagctg
aatgatctactcgatgcattggacttcaatcaagttgtcatttttgtcaaaagcgtcaac
agagctgccgagcttaacaagttgcttgtggagtgtaattttccatctatttgcattcac
tcgggcatgtcccaggaagaaagattgactcgttacaagggattcaaagaagggcataag
agaattctcgttgcgacagatctggtgggaagaggaatagacattgaacgggtgaatatt
gtgattaactatgatatgccagattcagctgacacttatcttcatcgggtgggtagagct
gggcggttcggaaccaaaggacttgccatcacgtttgtttcttctgcatccgattcagat
gttcttaatcaggttcaggagagatttgaagttgacatcaaagagctaccagagcagatt
gatacatcaacatacatgccatcttga
DBGET
integrated database retrieval system
