Primulina tabacum: 142525202
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Entry
142525202 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC142525202
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ptab04121
]
142525202
Enzymes [BR:
ptab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142525202
Ubiquitin system [BR:
ptab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
142525202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
Helicase_C
SHPRH_helical-2nd
zf-C3HC4
PHD
zf-RING_UBOX
zf-RING_2
zf-C3HC4_2
DUF969
zf-RING_5
TPR_2
zf-C3HC4_4
TPR_12
TPR_1
Zn_ribbon_RlmA
Motif
Other DBs
NCBI-GeneID:
142525202
NCBI-ProteinID:
XP_075485506
LinkDB
All DBs
Position
14:33761390..33782564
Genome browser
AA seq
1663 aa
AA seq
DB search
MGRRKQVRPHRTVGVLERNNYEVALNDDNYDLKKDDLVKVDKVDEPFFFEIDRSSWVSEE
EHYDVSEIVILNLRVSEEFFDYTVSEEICKDSRHFLRFRLSDVKEHLSRIKLGHWPVLCG
ASINMEFVMKCVTEGLERDVVIVSGNVDGPDEGVTSLVHLASLKLLTIRPISGTSFLKDM
MSMCVRVEILERMFNECESLLDNNRPLWKKSMMSVMDWLRPEVMTSEARYGSDAVSSMDV
EIPFGTETDSSVTKEQAKFEVSGFYEAIKPSKEAPMLDHHLPELLPELRPYQRRAAYWMV
QRENDGCGCLGGNERRRIVTPLSMPINLVDTPRIIYYNPFSGNISLHPFCSSSHVSGGIL
ADEMGLGKTVELLACMLAHRMPSFEVTDDASKMMQIQGSRESNLKRLKRERVECLCGAVT
ESYRYEGLWVQCDVCDAWQHADCVGYSMKQKASKSRDTAEIEKSKENSRNREKRKNNAKI
VEMVGDFVCSTCSALTRATESPVETAATLIVCPTTILHQWHAEILRHTKPGSLKVCVYEG
VRYTSFSDEPAIDIEELLGADIVLTTYDVLKTDLPHDSDRHEGDRRFMRYKKRYHVVPTH
LTRVLWWRICLDEAQMVEGNAAAATELALRLHAKHKWCITGTPIQRKLDDLYGLLRFLQA
NPFDTYRWWVDVICNPYERGDAEAMVFTHNFFKQLMWRSSKTLVWDELELPPQEECVSWL
SLSPIEQHFYQRQHETCVDDAQEVIETFKDHDRKGKEAGSLAYDVLSERFITNIEAAKLF
NSLLKLRQACCHPQVGSSGLRSLQKSPMTMEEILSVLIGKTKVEGEDALRKLVVALNGLA
GIAMIKQDYKEAVSLYKEALFIVEEHSDDFRLDPLLNIHIHHNLSEVLPLSVDSIPDNSV
SGRSEELTWTCHIDKIENNAAKKGRLIRDDPSLTSDNAPMISSCLLMNGKNCYDARPHVS
TNIQRSRTACEDLKQKYLSVFYVKLSTAQQEFRKSHEQLCDAFRGRKNQDTTWWLEALHH
IEQNKDLANEFIRKIGETLSADASQKSRSSAWLRSITTIKYHIQTGLDALEESRKTLLNK
LLEIDETMENPREEDVIRVRHCALCYTDFDGPACTHCELDEIFQVYEARLFRLNKSNNRE
SIISVEEAINLQKKKSALNHFYLTLSRPNKASNLSASGSEDNGKKRDAGEKVMVSKSPSD
LEVVMTAIRNNSRGFLGRERISAARKQLNLLEGMRKEYALARSLAISQAQVLRAHDEIKM
ATSRLRLRENEDDKSIDALSPEELDIASVENSSEKFLALATLSRIKGQLRFLKGLVQSKL
STCSESMDTLTVTEAAVISENGYLAKADDEESCPVCQEKLENQKMVFQCGHVTCCKCLFA
MTDQRLIEAGKFYNNMVRCPTCRQPTDFGNIAYADDRQNGKCGDCDKSEVSITVQGSYST
KIEAVTRRILWIISTDPTEKILVFSSWNDVLDVLQHAFATNSISYVRMKGGRKSQVAISE
FKGQRSHAKENNKKIDEETNTKSAQVLLLLIQHGANGLNLLEAHHVILVEPLLNPAAEAQ
AVGRVHRIGQKNKTQVHRFIVKDTVEESIYKLNRSRNTSSFISGNRKNLDQPCLTLRDVE
SLFRVSAPAVAAADQTPARSLRDLPPSVAAAIAAEQRLMDGAT
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgacggaagcaagttaggccgcatagaacggtgggagttcttgaaaggaacaat
tatgaagtggcattgaatgatgacaattatgatctaaaaaaagatgatcttgtcaaagtt
gacaaagttgacgaaccattcttttttgaaattgataggtctagttgggtttctgaggag
gagcattatgatgtttcagaaatcgttatattaaatttgagggtgagtgaggagtttttt
gattatacagttagcgaagagatttgtaaggattcaaggcactttttgaggtttcggttg
agtgatgtcaaggagcatctgagccggataaaattagggcactggccggtcttgtgcggg
gctagtataaatatggagtttgtgatgaaatgcgtaactgagggtttggagagggatgtt
gttattgtgtctggaaatgttgacggaccggatgagggagttacaagtcttgttcacttg
gctagtttgaagctcttgacgatacggcctatttcaggaaccagttttttgaaagatatg
atgtccatgtgtgttagggttgaaattttggagcgcatgtttaatgagtgcgagtcactg
cttgataataataggcccctttggaaaaagagtatgatgagtgttatggattggctgcgc
ccagaagttatgacttcagaagccagatatggatctgatgccgtttctagcatggacgtt
gagataccttttggaacggagactgattcttcggtgaccaaagaacaagcaaaatttgaa
gtttcaggtttctatgaagccattaaaccatccaaggaggcaccaatgctggatcaccac
ctacctgagttgcttcctgagctacgaccttaccagcgtcgggcggcttactggatggta
caacgagaaaatgatggttgtggatgtttaggcggaaatgagagaaggcggattgttact
cctctatctatgcctataaatttggtagacacacctcgaataatttattacaatcccttt
agcgggaatatttctttgcatcctttctgctcctcgtcacatgtttctggtggaattctt
gctgacgagatgggcttggggaaaactgttgagttgctagcttgtatgttagctcatcga
atgccatcatttgaagtcactgatgatgctagcaagatgatgcaaattcaagggtctcga
gagagtaacttgaaaagactgaagagggagcgtgtagagtgtttatgtggtgctgtaact
gagagctatagatatgaaggtttgtgggtgcagtgtgacgtttgtgatgcttggcaacat
gctgattgtgttgggtattcaatgaaacaaaaagcttcaaaatctagggacactgctgaa
atagaaaaaagtaaggagaactcaagaaatcgtgaaaaaagaaaaaataatgccaaaata
gttgagatggttggtgattttgtatgttcgacgtgttcagcactaacccgagccactgaa
tctccagttgaaacagctgcaactcttattgtatgtccaaccactatattgcatcagtgg
catgctgaaattcttcgtcatacaaaacctggttccttgaaagtttgtgtttatgaaggc
gtcagatatacctcattttctgatgaacctgctattgatattgaagaacttctgggtgct
gatattgtcctgacaacctatgatgtgctcaaaacggatttgccgcatgattctgataga
catgaaggggatcggcgctttatgagatacaagaagagataccatgttgttccaactcat
ttaaccagagtattgtggtggaggatctgtctggatgaagctcaaatggttgaaggtaat
gctgctgctgcaaccgaattggcactacggttacatgccaagcataaatggtgtataaca
ggaactccaattcaacgcaaacttgatgacctatatggccttttgagatttctccaagca
aatcctttcgatacctacaggtggtgggttgatgttatttgtaatccatacgagagggga
gatgcagaagcaatggtgtttactcacaacttcttcaaacaacttatgtggcgctcctca
aaaacacttgtttgggatgagctagaacttccgccacaggaggaatgcgtctcttggctt
tccctctctccaattgaacaacacttttatcagaggcaacatgaaacctgtgtggatgat
gcccaagaggtcattgaaacctttaaggatcatgatagaaagggaaaagaagcaggttcc
cttgcatatgatgtcctatcagagcgttttatcaccaatatagaggctgcaaagttgttc
aactcactcctgaagcttcgtcaagcgtgttgtcatcctcaagtgggaagttctggttta
cgctctttacaaaagtctccaatgacgatggaggaaatattgtcggttctcattggaaag
accaaggtagaaggtgaggatgccctaaggaaattagttgttgcgttgaatggacttgca
ggtatagctatgatcaagcaagattataaagaagctgtatctttgtataaagaggcgcta
tttatagtcgaggagcattctgacgattttcgcttggatcctctgttgaacatccacatt
caccataatctttctgaagtattgccactttctgtggacagcataccagataactctgtc
tccggaagatcagaagaattaacctggacttgtcatattgacaaaatagaaaataatgct
gcgaaaaaaggaagattgatcagagatgatcccagcctaacctccgataatgcacctatg
atttcctcttgtttattgatgaatggtaaaaattgttatgatgctcggcctcatgtatca
acaaacatccagcgctcaaggacggcatgtgaagatctgaaacagaaatacttatctgtg
ttttatgttaagttatccacagctcaacaggagtttaggaaatcacatgaacagttgtgt
gatgcttttaggggtaggaaaaatcaggatacaacttggtggttggaagccctacatcac
attgagcaaaataaggatttagctaatgagtttattagaaaaataggagaaactctctcg
gcggatgcttcccagaaatcaagaagttctgcctggttacgcagcataactactataaaa
taccatattcaaactggtttggatgctctagaagagtcgaggaaaactttgctgaataaa
ctcttggaaattgatgaaaccatggaaaatcccagggaggaggatgttattcgtgtgaga
cattgtgctttatgctatactgactttgatggtcctgcatgcacccattgcgagttggat
gaaatatttcaggtttacgaagcgaggctatttcgccttaacaaaagcaataacagagag
tcaattatatctgttgaagaagctattaaccttcaaaagaagaagtctgctctgaatcac
ttttacttgactttgtcacggcctaacaaggcctcaaatttgtctgcttctggctctgaa
gataacggaaagaaaagggatgctggggagaaagtgatggtctcaaagtctccttctgat
ttggaggttgtgatgactgctatcagaaacaactccagaggattcttaggaagagagaga
atttcagcagccagaaagcagcttaatctccttgaaggtatgcgcaaagagtatgctcta
gcgaggtctttggcaatttctcaagcacaagtattgcgagctcatgatgaaataaagatg
gcgacctcacgtctacgccttagagaaaacgaggatgataaatctatcgatgctttaagc
ccagaagagttggatatcgcaagtgttgaaaattctagtgaaaaatttctagcattggct
acattgtcacggataaaagggcaacttcgctttttgaagggtttagtgcaatctaaacta
agtacgtgctcggaaagcatggatactttaaccgtaaccgaagctgctgtaatatcggag
aatggctacctagctaaagcagatgatgaagaatcatgcccagtttgtcaagagaaactt
gaaaaccagaaaatggtttttcaatgtggtcatgtgacgtgttgtaaatgcttatttgca
atgaccgaccagagattgattgaagctggaaaattttataacaacatggtaagatgccca
acatgtcgacaacccactgattttggaaatatcgcatatgctgatgatcggcaaaatgga
aagtgtggtgattgtgacaaatctgaggtttctataaccgtccaaggttcatacagtaca
aagatcgaagcagtgacaaggaggattttatggattatttctactgatcccacagagaag
attcttgttttctcaagttggaatgatgtccttgatgtgttgcagcatgcatttgctacc
aacagcataagctatgtcaggatgaaaggaggaaggaaatcacaagttgccatcagtgag
ttcaagggacagagaagccatgcaaaagaaaataataaaaagattgatgaggaaacaaat
accaagtctgcccaagttctacttctcctaattcagcatggggctaacgggctaaatctt
ttggaagcacatcatgtcattctagtcgagccactgttgaatccagcagctgaagcacag
gcagtcggtagggtgcaccgaattggacagaagaataaaactcaagttcatcgctttatc
gtgaaagacaccgttgaagaaagcatatataaactgaatcggagtaggaacacaagttca
tttataagtgggaacagaaagaatctagatcagccatgtctgacgcttagagatgttgag
tccttgttcagagtatcggcacctgctgttgcagcagcagatcaaacgcctgccagaagc
ttgagggatttaccaccttctgtagctgctgctattgctgctgaacagagattaatggat
ggcgctacataa
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integrated database retrieval system
