Primulina tabacum: 142526171
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Entry
142526171 CDS
T11246
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
ptab03015
mRNA surveillance pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142526171
09122 Translation
03013 Nucleocytoplasmic transport
142526171
03015 mRNA surveillance pathway
142526171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142526171
03041 Spliceosome [BR:
ptab03041
]
142526171
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142526171
TREX complex
142526171
Spliceosome [BR:
ptab03041
]
Complex C
Other components
EJC/TREX
142526171
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142526171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_PARP14_1
Motif
Other DBs
NCBI-GeneID:
142526171
NCBI-ProteinID:
XP_075486541
LinkDB
All DBs
Position
2:complement(3847932..3850905)
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AA seq
242 aa
AA seq
DB search
MSNLDLSLDDIIKTSKNSARAPNYGPVPTRRFDNRSADRATPYSFPKARAAETRWSDSML
AEERAAAAFYPIQGGARDLVLETGTKLLISNLDYGVSDLDISELFSDVGELKSCAVHYDK
FGRSEGTAEVVFCRRTDAEAAIKRYNHVQLDGKPIKIEIVGVNMLPPSGIPLASFGGSRN
NNGAPIWNERVRGRGGVRVLLRRGARGVRNSRGNGRGDGMRVSAQDLDADLDMYHAAAKE
TS
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatctggacttgagtttggatgatataatcaaaacgagcaaaaattcggccaga
gcaccgaattatgggccggtgccgaccaggcggttcgataaccgttccgctgaccgcgcc
actccgtattccttccccaaggcgcgggcagcggagactcggtggagcgacagcatgttg
gcggaagagagggccgctgcggcgttttaccctattcaaggaggagcgagggatttggta
cttgagacggggacgaaactcttgatttccaatctggattacggtgtgtcggaccttgac
atcagtgagctgttctcagatgtaggtgagctgaaaagttgtgcagttcactatgacaaa
tttggacgatcagaggggactgcagaagtagttttttgtcgacgtacagatgcagaggcg
gctatcaaaagatacaatcatgtccaactggatggaaagcccattaaaatcgagattgta
ggggtgaacatgctcccaccttctgggatacctcttgcttcatttggtggctctaggaat
aacaatggtgctcccatatggaatgagcgagttcgaggaagaggtggtgttagagtacta
ctccggcgtggtgctcgtggtgtgaggaattctcgtggaaatggtagaggagatggtatg
agggtatctgcacaagatcttgatgccgatttggatatgtaccatgcagctgcaaaagaa
acaagttag
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