KEGG   Primulina tabacum: 142526171
Entry
142526171         CDS       T11246                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
ptab  Primulina tabacum
Pathway
ptab03013  Nucleocytoplasmic transport
ptab03015  mRNA surveillance pathway
ptab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142526171
  09122 Translation
   03013 Nucleocytoplasmic transport
    142526171
   03015 mRNA surveillance pathway
    142526171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptab03019]
    142526171
   03041 Spliceosome [BR:ptab03041]
    142526171
Messenger RNA biogenesis [BR:ptab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     142526171
    TREX complex
     142526171
Spliceosome [BR:ptab03041]
 Complex C
  Other components
   EJC/TREX
    142526171
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    142526171
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3 RRM_PARP14_1
Other DBs
NCBI-GeneID: 142526171
NCBI-ProteinID: XP_075486541
LinkDB
Position
2:complement(3847932..3850905)
AA seq 242 aa
MSNLDLSLDDIIKTSKNSARAPNYGPVPTRRFDNRSADRATPYSFPKARAAETRWSDSML
AEERAAAAFYPIQGGARDLVLETGTKLLISNLDYGVSDLDISELFSDVGELKSCAVHYDK
FGRSEGTAEVVFCRRTDAEAAIKRYNHVQLDGKPIKIEIVGVNMLPPSGIPLASFGGSRN
NNGAPIWNERVRGRGGVRVLLRRGARGVRNSRGNGRGDGMRVSAQDLDADLDMYHAAAKE
TS
NT seq 729 nt   +upstreamnt  +downstreamnt
atgtcgaatctggacttgagtttggatgatataatcaaaacgagcaaaaattcggccaga
gcaccgaattatgggccggtgccgaccaggcggttcgataaccgttccgctgaccgcgcc
actccgtattccttccccaaggcgcgggcagcggagactcggtggagcgacagcatgttg
gcggaagagagggccgctgcggcgttttaccctattcaaggaggagcgagggatttggta
cttgagacggggacgaaactcttgatttccaatctggattacggtgtgtcggaccttgac
atcagtgagctgttctcagatgtaggtgagctgaaaagttgtgcagttcactatgacaaa
tttggacgatcagaggggactgcagaagtagttttttgtcgacgtacagatgcagaggcg
gctatcaaaagatacaatcatgtccaactggatggaaagcccattaaaatcgagattgta
ggggtgaacatgctcccaccttctgggatacctcttgcttcatttggtggctctaggaat
aacaatggtgctcccatatggaatgagcgagttcgaggaagaggtggtgttagagtacta
ctccggcgtggtgctcgtggtgtgaggaattctcgtggaaatggtagaggagatggtatg
agggtatctgcacaagatcttgatgccgatttggatatgtaccatgcagctgcaaaagaa
acaagttag

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