Primulina tabacum: 142526197
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Entry
142526197 CDS
T11246
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142526197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142526197
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142526197
mRNA degradation factors
5'-3' decay
Decapping complex
142526197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
GerPC
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WDR55
DUF5536
DUF2497
DUF6003
DUF445
Motif
Other DBs
NCBI-GeneID:
142526197
NCBI-ProteinID:
XP_075486561
LinkDB
All DBs
Position
15:36029698..36038296
Genome browser
AA seq
1435 aa
AA seq
DB search
MATPGNPNPHGGAPRFDMPKFFRPSTSPAATPASSPNPQNITNSDSAFTNPNLISAPFPL
PSTSFPPPTATGGGQYSYLPQTSPFHPQPQFHHLPIYSPPPNSREFANVHPQRSMSYPTP
TLQPQVPVPSSPHHLNFQAPAGSQNPNNHGARLMALLSAPPSTLDIPNESTMAVPQYLPS
SSGADFSMPQFVNNLPSGPGLLVSHQGHVMRMPSSKLPKGRHLSGDHLVYDIDIRLPGEV
QPQLEVTPITKYGSDPGLAVGRQIAVNKTYICYGLKLGAIRVLNINTALRSLLKGLAQRV
TDMAFFAEDVHLLASASVDGRVYVWKITEGPDEEDKQQITGRIVTAIQITGEGESVHPRV
CWHCHKQEVLAFGIGKHILKIDTAKIGKGEKFSADEPLKCTVDKLVDGIQLVGSHDGEVT
DLSMCQWMTTRLVSASVDGKIKIWEDRNPLPIAVLQPYDGQPVNSVTFLAAPHCPDHIIL
VTGGPLNREVRIWVSASEEGWLLPIDAESWHCVQSLELKSSEVRLEEAFFNQVIALSQAG
LLLLANAKRNAIYVVHLEYGPNPAATHMDYIAEFTVTMPILSFTGTSEYLPNGEHVVQVY
CVQTQAIQQYALDLSQCLPPAIGNVVLEQSDSNVSRKASIIEGRTNLESSGIKATEVSIT
GSAPSSSIHESGLENIPTARYPVDTVSAESSSLQEFSPSSVESKQMPSPVIASDGNHSSV
ASPSLPLSPKQSGTLSGFRNPSSNFEHGVLSSDRGVDLKIVEYTVDRQVDAIHSNLSDVA
SLDSDSRNYDSNYSQDDISLALNHPIKFRHPTHLVTPSEILMANSSSEVIHTTEAQSEVE
LKIHDVVMSNDTSNSVVEVKVVGDTKFNQNIDDGSREELQTFSSEKRENTFYSQASDLGI
EMARECHAVSPEAHIVEKDRQFDVTGGTETVPLPLTVEEAIHDSAKDGPSKVIDSSIPVL
APQPALNAKGKKQKGKSAQGSGPSSPRPSAFNSADSSNEPGISYSPSVESQIYSMQEILH
QLVALQKDMQKQMTTMVAVPVTKEGKRVEASLGRNMEKAVKANADALWARLQEENAKQEK
ASRERAQQVTNMISSFLNKDLPSLIEKSVKREVSSLGQSVARAIIPAIEKAISTSIGESF
QKGVGDKAVNQLEKSFNSKLEAVVARQIQSQFQTSGKQALQETLKSSLEVSVIPAFEMSC
REMFEQVDSAFHKGMVEHTAAAQQQFEASHSSLALVLRDAITSASSMSQTLSNELLDGQR
KLVDLAVAGVNCEAANPLINQLSNGPLAGLHEKHEIDPTKELSRLVAERKYEEAFVAALH
RSDVTVVSWLCSHVDLPTLLVMNPLPLSQGVLLSLVQQLACDIGKETPRKLNWMREVLTA
INPTDPAIMVHVRPIFEQVYQIMNHHRSVPTTTGSELSNVRLIMHVIHSMLMGSK
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccctggaaatcccaatccacacggcggagctcctcgtttcgacatgcccaag
tttttcagaccttctacttccccggcggcaacacctgcttccagccccaatccccagaac
attaccaacagtgatagcgccttcactaaccctaatttgatttcagctccctttccgctc
ccctcgacctcttttccgccgcccaccgctaccggcggagggcagtattcgtatcttcct
caaacctcgccgttccaccctcaaccccagttccaccatcttcctatatacagtccccca
cccaactctcgggaatttgcgaacgttcacccccaaagatccatgtcttatcctacgcca
accctccaaccccaagttccagtgcctagttccccccaccaccttaatttccaagcccca
gctggttcccaaaaccctaacaaccacggtgctcgtttgatggcgcttttgagtgcgcca
ccttcgacgctggacattccaaatgagtccacaatggcggtaccacaatatctccccagt
tcttcaggcgcggatttttccatgccacaatttgtgaacaatttgccatctgggcctgga
ttattagtttcacatcagggccatgtgatgcggatgccaagcagtaaacttcccaagggg
aggcatttgagcggcgatcatctggtttacgatatagatatcaggttgccaggagaggtc
cagccccagcttgaggttacacccattaccaaatatgggtcggacccgggacttgcagtg
ggcaggcaaattgcagtgaataaaacatatatatgctatggacttaagttgggggctatt
agggtgcttaatatcaacacagccttaagatcgttgcttaagggcctagctcagagggtc
acggacatggctttctttgctgaggatgttcaccttttagctagtgcaagtgtcgatggt
cgtgtttatgtgtggaagattactgaaggtcctgacgaagaagacaagcagcaaattact
gggcgaattgtcactgccattcaaattactggagaaggagaatctgttcatccccgagtt
tgttggcattgccataaacaagaagttcttgcctttgggattggtaagcacattttgaag
attgatactgcgaaaataggaaaaggagaaaaattctctgcggacgaacctctaaaatgt
acagttgataagttggttgatggcatccaactcgttggtagtcatgatggggaagtgact
gacttgtctatgtgtcaatggatgaccacccgtttggtatctgcttctgtagatggcaag
attaaaatttgggaagatcgaaatccactaccaatagcagttctccagccttatgatggg
caacctgttaattctgtcacatttttggccgctcctcattgcccagaccatataatactt
gtgactgggggccctctgaaccgggaagtgaggatatgggtatcagcaagtgaggaaggt
tggttacttcctattgatgctgaatcttggcactgcgtgcaatcgttggaattaaagagt
tcagaggttcgattagaagaggctttcttcaatcaagtgatagccttatcacaagctggt
cttcttttattggcaaatgccaaaaggaatgctatatatgttgtgcacttggaatacggt
cctaatcctgccgcaacacacatggattacatagccgaatttactgtcacaatgccaata
ctgagttttacagggacgagcgagtatctgcctaatggggagcatgttgttcaggtatat
tgtgtccagacacaggctattcagcagtatgcgttggacttatcacagtgtctgccacct
gcaataggaaatgtagtgcttgagcagtcggactccaatgtttcacgcaaagcttctatt
atagaaggacgtaccaatttggagtcatctggcattaaagcaaccgaggtatctataaca
ggttcagcaccctcatcatccatacatgaaagtggcttggagaatatacctactgcgaga
tatcctgttgacactgtttctgccgagtcatccagccttcaggagttttctccctcaagt
gttgaaagcaaacaaatgccttcacctgttattgctagtgatggtaatcattcttcggtt
gcttcaccttctctacctttgagccccaagcagtccggaacactttctggttttagaaat
ccatcgagcaactttgagcatggtgttttgagcagtgatcggggtgtagatcttaaaatt
gttgaatatacagttgacagacaagtggatgccattcatagtaacttgtctgacgttgct
tcattggatagtgattcaagaaactatgacagtaattattctcaagacgatatctccttg
gcactcaatcatccgataaaattcagacaccccactcatctggttactccttctgagata
ttgatggccaattcatcatccgaggtgatacacacaacagaggcccaaagcgaggtcgaa
ctaaaaattcatgatgtggtaatgagcaatgatacaagcaattctgtcgtagaggtaaag
gtagtgggcgatacaaaatttaatcaaaatattgatgatggatctcgagaagaacttcag
actttttcgtcggaaaagagggaaaataccttttactctcaagcatctgacctaggaatt
gagatggcccgagaatgccatgccgtatcgcctgaagctcatatagtggagaaagatcgg
cagtttgatgtgactggtggaactgaaacggttcccctacctttgactgtagaagaagca
attcatgactccgcgaaggatggtcccagcaaagtcattgattcatcaattcctgtgctg
gccccgcaacctgcattaaatgccaaagggaagaagcaaaagggaaagagtgctcaagga
tctggcccatcttcgccccgaccgagtgctttcaattcggcagattcttctaatgaacca
ggcatcagctatagtccttctgtagaatcacaaatttattccatgcaagagattctgcat
cagcttgtagctctgcaaaaagacatgcagaagcagatgacaacaatggttgctgtccct
gttaccaaagaaggcaaaagggttgaggcatcattgggacgaaacatggagaaagctgta
aaagcgaatgctgatgctttatgggctcgcttgcaagaagagaatgcaaaacaggaaaag
gcatctcgagagcgagcacaacaagtaacaaatatgatcagcagtttcttaaacaaagat
ttaccttcattgatagagaaaagtgtgaaacgagaagtttcttcacttgggcaatctgtg
gctcgggctatcattcccgcaattgagaaagcaatatccacttctattggggagagtttc
cagaaaggggtgggtgataaagctgttaatcaactggaaaaatcattcaactccaagctt
gaagctgtagttgctaggcaaatccaatcccaatttcaaacttcaggcaagcaagctctt
caggaaacactgaaatcgagtttggaagtttctgtgatccctgcatttgagatgtcatgc
agggaaatgtttgagcaggttgattccgcgtttcacaaaggaatggttgaacatactgct
gcagctcagcagcagttcgaggcttcacattcttcacttgcacttgttttgagggatgcc
ataacttccgcatcatcaatgtctcaaactttgagcaatgagttgcttgatggtcaaaga
aaattggtagatcttgctgtcgcaggagtaaattgtgaagcagcaaatcctttgattaat
cagctgagtaatggtcctttggctggtctacacgagaagcacgagattgatccaacaaaa
gagctttctagattggtagctgagcggaaatatgaagaggcttttgttgctgccttgcat
aggagtgatgttactgttgtatcatggctatgttctcatgttgatttgccaacgcttttg
gttatgaatccactaccattgagccagggggtactcctctctcttgtacagcaattggca
tgtgatatcggcaaggaaacccctcgaaaactaaattggatgagggaggttctaactgct
ataaatccaaccgacccagcgattatggtgcacgtacgtcccatctttgagcaagtttat
caaataatgaatcaccatcgcagtgttccaaccactacgggttccgaactttccaacgtt
cgcttgattatgcatgtcatccattccatgcttatgggctctaaatga
DBGET
integrated database retrieval system
