Primulina tabacum: 142526198
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Entry
142526198 CDS
T11246
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142526198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142526198
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142526198
mRNA degradation factors
5'-3' decay
Decapping complex
142526198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
DUF5536
Beta-prop_HPS5
Ribosomal_uL24m-like
Motif
Other DBs
NCBI-GeneID:
142526198
NCBI-ProteinID:
XP_075486562
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All DBs
Position
15:36039362..36047606
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AA seq
1431 aa
AA seq
DB search
MATPGNSNPPPFDMPKLFRPSTSPAASPASSPHSQNITNSDSAFTNPNLISAPFPPPSAS
FPPHTTSGGGQYSYLPQTSPFHHQPQFHHLPMYNPPSNSREFANVNSQRSMSYPTPTLQP
QVPVPSSPHHLNFQASASSQNPNNHGARLMALLSAPPSTLDIPNESTMPMPQNLPTSSGS
DFSMPQFVNNLPSGPGLLVSHQGPVMRMPSSKLPKGRHLSGDHLVYDIEVRLPGEVQPQL
EVTPITKYGSDPGLAVGRQIAVNKTYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMA
FFAEDVHLLASASVDGRVYVWKINEGPDEEDKQQITGRIVTAIQITGEGESFHPRVCWHC
HKQEVLTVGIGMHILKIDTTKVGKGGKISADEPLKFTIDNLIDGIQLVGSHDGEVTDLSM
CQWMTTRLVSASVDGTIKIWEDRNPLPIAVLQPHGGQPVNSVTFLAAPHRPDHIILMTGG
PLNREVKIWVSASEEGWLLPIDAESWRCTQTLELKSSEARIEEAFFNQVIALSQAGLLLL
ANAKRNAIYVVHLEYGPNPAATCMDYIAEFTVTMRILSFTGTSESLPNGEQVVQVYCVQT
QAIQQYALDLSQCLPPAIGNLVYEKSESNVSREASIIEGHIDLESSGIKATGVSITSSAH
SSSIHDSGLENKPTVRYPVDPVSAESPSLQEFAPSSIESKPMPSPVNASDGNLSSVASPS
LPLSPRLSRTLSGFRNPTSSLEHGVLSTDRGVEPKIVEYTVDRQMDSVHSNLSDVASLDG
DSRNYDNKHSQDDIPLAFNHPINFRHPTHLITPSEILMANSSSEVMHKTEAQSEVELKIQ
DVLMSNDTRNSIVEVKVVGETKFNQNIDDESQEELQSFLSEKRESIFCSQASELGVEMAR
ECRGISPETYIVEEDRQFDGTGGTETVAQPSTVEEEIHDSGKDGPSSVIESSIPVLAPQP
TPNAKGKKQKGKSAQGSGPSSPSPSAFDSADSSNEPGISYGTPVESQIYSMQEILHKLVA
LQKDMQKQMTTMIAVQVTKEGKRLEASLGRNMEKAVKANSDALWARLQEDNAKEEKASRE
RAQQVTNIISSFLNKDLPSLIDKTVKREVSSHGQSVARAIIPTMEKAIFTTIAESFQKGV
GDKAVNQLEKSVNFKLEAVVARQIQSQFPTSGKQALQETLKSSLEVSVIPAFEMSCRAMF
EQVDSAFQKGMVEHTAAAQQQFEASHSSLALVLRDAITSASSMSQTLSNELLEGQRKLVA
LAVAGANSKAANPLTDQLSNGPLGILHEKLEVDPTKELSRLVAERKYEEAFIAALHRNDV
TVVSWLCSHVDLLSLLAMNPLPLSQGVLLSLLQQLACDISKETPRKLTWMREVLGAINPA
DPVIMVHVRPIFEQVYQIMNHHHSIPTTAGSELSNIRLIMHVINSMLMGSK
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccccggaaattccaatccacctccgttcgacatgcccaagttattcagacct
tccacttccccggcagcatcacctgcttccagcccccattcccaaaacattaccaacagt
gacagcgccttcactaaccctaatttgatttcagctccctttccgcccccctcggcctct
tttccaccgcacaccacttccggcggagggcaatattcctatcttcctcaaacctcgccg
ttccaccaccaaccccagttccaccatcttcctatgtacaatcctccatccaactctcgg
gaatttgcgaacgttaactcccagaggtccatgtcctatcctacgcccactctccaaccc
caagttccagtgcctagttccccccaccaccttaatttccaagcctcggctagttcccaa
aaccctaacaaccacggtgctcgtttgatggcgcttttgagtgctccaccttcgacgctg
gacattccaaatgagtccacaatgccgatgccccaaaatctccccacttcttcaggctcg
gatttttccatgccacaatttgtgaacaatttgccatctgggccaggattattagtttca
catcagggccctgtgatgcggatgccaagtagtaaactccccaaggggaggcatttgagc
ggcgatcatttggtttatgatatagaagtcaggttgccaggagaggtccagccccagctt
gaggttacacccattaccaaatatgggtcggacccaggacttgcagtgggcaggcaaatt
gcagtgaataaaacatatatatgctatggacttaagttgggggctattagagtgcttaat
atcaatacagccttaagatccttgctcaagggcctagctcagagggtcacagacatggct
ttctttgccgaggatgttcaccttttagctagtgcaagtgtcgatggtcgtgtttatgtg
tggaagattaatgaaggtcctgatgaagaagacaagcagcaaattactgggcgaattgtc
actgccattcaaattactggtgaaggagaatcttttcatccccgagtttgttggcattgc
cataaacaagaagttcttactgttgggattggtatgcacattttgaagattgatactaca
aaagtaggaaaaggaggaaaaatctcagccgatgaacctctaaaattcaccattgataat
ttgattgatggcatccaacttgttggtagtcatgatggggaagtgactgacttgtctatg
tgtcagtggatgaccacccgtttggtatctgcttcagtagatggcacgattaaaatttgg
gaagatcgaaatccattaccaatagcagttctccagcctcatggtggacaacctgttaat
tctgtcacatttttggccgctcctcatcgcccagaccatataatacttatgacgggggga
cctctgaatcgggaagtgaagatatgggtatcagcaagtgaggaaggttggttacttcct
attgatgctgaatcatggcgctgcactcagacattggaattaaagagttcagaagctcga
atagaagaagctttcttcaatcaagtgatagccttgtcacaagctggtctacttttattg
gcaaatgccaaaaggaatgctatatatgttgtgcatctggaatacggtcctaatcccgct
gcaacatgcatggattacatagctgaatttacggtcacaatgcgaatactgagtttcaca
ggtacaagcgagtcgctacctaatggggagcaagttgttcaggtgtattgtgtccagacc
caggctattcagcagtatgcgttggacttgtcacagtgtctgccacctgcaataggaaat
ttagtgtatgagaagtcagaatctaatgtttcgcgtgaagcttctattatagaaggacat
atcgatttggagtcttctggcattaaagcaacaggggtatcgataactagttcagcacac
tcgtcatccatacatgatagtggcttggagaataaacctactgtgagataccccgtggac
cctgtttctgccgagtcacccagccttcaggagtttgctccctcaagtattgaaagcaaa
ccaatgccttcacctgtaaatgctagtgatggtaatctttcctctgttgcttcaccttct
ctacctttgagccccaggctgtccagaacactttctggttttagaaatccaacgagcagc
ttggagcatggtgttttgagtactgatcggggtgtagagcctaaaattgttgaatataca
gttgacagacaaatggacagcgttcatagtaacttgtctgacgttgcttcattggatggt
gattcaagaaactatgataataagcattctcaagacgatatccccttggcgttcaatcat
cccataaatttcagacaccccactcatctgattactccttctgagattttgatggccaat
tcatcctctgaggtgatgcacaaaacagaggcccaaagtgaggttgaactaaaaattcaa
gatgtgttaatgagcaatgatacaaggaattctattgtagaggtaaaggttgtgggcgaa
acaaaatttaatcaaaatatcgacgatgaatctcaagaagaacttcagtcttttctgtcg
gaaaagcgggaaagtatcttttgctctcaagcatcggaactaggggttgagatggcccga
gaatgccgtggcatatcacctgaaacttatatagtagaggaagatcggcagtttgatgga
actggtggaactgaaacagttgcccaaccttcaactgtagaagaagaaattcacgattcc
ggaaaggatggtcccagcagtgtcattgagtcatcaattcctgtgctggctccacaacct
acacccaatgccaaagggaagaagcagaagggaaagagtgctcagggatctggcccatct
tcaccctcaccaagtgctttcgattcggcagattcttctaatgaaccaggcatcagctat
ggcactcctgtagagtcacaaatttattccatgcaagagatcttgcataagcttgtagct
ctgcaaaaagacatgcagaagcagatgacaacaatgattgctgtccaagttaccaaagaa
ggcaaaagacttgaggcatcattgggacgaaacatggagaaagctgtaaaagccaattct
gatgctttatgggctcgcttgcaagaagataatgcaaaagaggaaaaggcgtctcgagag
agagcacaacaagtaacaaatattataagcagtttcttaaacaaagacttgccttcattg
atagataaaactgtgaaacgagaggtttcttcacatgggcaatctgtggctcgggctatc
attcccacaatggagaaagcaatattcactactattgctgagagcttccagaaaggggtg
ggtgataaagctgttaatcaactggaaaaatcagtcaacttcaagcttgaagctgtagtt
gctaggcaaatccaatctcaatttccaacttctggcaagcaagctcttcaggaaacactg
aaatcgagtttggaagtttctgtgattcctgcgtttgaaatgtcatgcagggcaatgttt
gagcaggttgattccgcgtttcaaaaaggaatggttgaacatactgcagcagctcagcag
cagtttgaggcttcacattcatcacttgcacttgttttgagggatgctattacttccgcg
tcatcaatgtctcaaactttgagcaacgagttgcttgagggtcaaagaaaattggtagct
cttgctgttgcaggagcaaattctaaagcagcaaatcctttgactgatcagctgagtaat
ggtcctttgggtattctacacgagaagctcgaggttgatccaacaaaagagctttctaga
ttggtagctgagcggaaatacgaggaggctttcattgctgccttgcataggaatgatgtt
actgttgtatcatggttatgttctcatgttgatttgctttcgcttttggccatgaatccg
cttccattgagccaaggggtactcctctctcttctacagcaattggcctgtgatatcagc
aaggaaacccctcgaaaactaacttggatgagggaggttctaggtgctataaatcctgcc
gacccagtgattatggtgcacgtacgtcccatcttcgagcaagtatatcaaataatgaat
caccatcacagcattccaaccactgccggttccgaactttccaacattcgcttgatcatg
catgtaatcaattccatgcttatgggctcaaaatga
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