Primulina tabacum: 142526516
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Entry
142526516 CDS
T11246
Name
(RefSeq) pre-mRNA-processing protein 40A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
ptab Primulina tabacum
Pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142526516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptab03041
]
142526516
Spliceosome [BR:
ptab03041
]
Complex A
U1 snRNP components
U1 related factors
142526516
Complex B
142526516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
142526516
NCBI-ProteinID:
XP_075487086
LinkDB
All DBs
Position
15:2865714..2876211
Genome browser
AA seq
1066 aa
AA seq
DB search
MANNPQFTGMQPLRPRIVGGHVGPPPSPLPPMSMQFRSAVPPPPPPQPPQPYIPVTPQQF
QPVGHSNMGMPPHPMPIQYPQGAPLPPPLPPAQRTGLVLPQGPPLPLTDFQPNRPVMPAP
VQPPISNNFMPSFSGPVISPAAYTVSSSSSGLQQMNVGSISQNQSMPQTNVPNFSISGHS
WYPMGNQNLQSTIQPQQEVELSAGGQPWFATGNQNLKPLTPFQQTGEQNTGAQQLIPSTN
QNVQSGIPFRQTEELSDTEKLTKPAVIEKALSEWKEYTSRDGKKYYYNKRTGISLWEKPL
ELMTLTERADASTDWREFTTPEGRKYYFNKVTKQSKWAIPDEVKLARERVTMISCEGKPL
MKHVTSLASAGVHTSEIPASFPNANNSSSQGGKTIVSSPVSVEPAVNPEPAATSGLSGKL
EEAAYTQQDVTGSHDPVETASSIVAADTSVPIELDSSITSPIRTAKGISPREAAPPSVDE
TSNGGLEETNEIFVISGSGSIIASEEKKVEHGPVVYESKEEAKNAFKVLLETANVGSDWN
WDQAMRVIINDRRYGALRTLGERKQAFNEFVGQKKKQEVEERRARQKKAREDFKKMLDES
EDLTSSTRWGKAVSMLEHDERFQAVERAKDREDLFEDHLEDLKKKERAKALEERKRHKTE
YLEFLKSCDFIKASSQWRKIQHRLETDQRCSRLEKIERLEIFQEYIRDLELVEEEQRKLR
MEDMRKAERKNRDEFRKLMEEHVVNGILTANTHWRDYCTKVKDMPAYLAVSSNTSGSKAK
DLFEDVIDDLEKQYLEDKEKIEGAIKNEKISLSTSCTLEDFKAALQKAITSAKISEINLK
LVYNELLEITKEKEEKEAKKRKRLAEDFYDFLFTLKEITASSKWEDCKPLVGDRFLGDES
FFQEIFDNFIIELKEKAKEKERRRREEKAKKEKRREDKERRNKDRRVESKKGRERRKKGE
TDSDDSNSHSFEENRRSRDRSKKHRKRRMDYFDDTNFDGDDKDRSRSHRHITDTKKSKLI
EKQSCSADVDTENESKKHKRDNRDGRNEDVDVEEHNEEPCEDGEVR
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaatcctcagttcactggcatgcagcctctccggcctcgcatagttggtggt
cacgtgggccctcctcctagccctcttcctcccatgtcgatgcaatttcgatcagcagtt
ccacccccgccgccgccacagccacctcaaccatacattcctgtgactcctcagcaattt
cagcctgttggacattcaaacatggggatgcctcctcatcccatgccaattcagtatccc
caaggagcgccactgcctcccccactgccccctgctcaaagaactggtcttgttttgccg
caaggaccacctctgcctctgacagatttccagcctaatagacctgtgatgcctgctcct
gttcagcctccaatctcgaataatttcatgcctagtttttctggtcctgttatttctcca
gcggcatacactgtatcctcgtcatctagtggcctgcagcaaatgaatgtaggctcaata
tctcagaatcagtcgatgccccagactaatgttcccaatttttctatcagtggacactca
tggtatcctatggggaatcagaacttgcaatcgactatccaaccacagcaagaggtggaa
cttagtgctggaggacaaccatggtttgcaactgggaaccagaatttaaaacctcttacc
ccttttcagcagaccggggagcaaaatactggtgcacaacaattgattccaagtacaaat
cagaatgtacaatcaggaataccttttcggcagactgaggaactctctgacacggagaaa
cttaccaagcctgccgtcattgaaaaggctttatcagaatggaaagaatacacctctcgt
gatggaaaaaaatattattataacaaacggacagggatatctctgtgggagaagccttta
gaattgatgaccctcactgagagggcagatgcatcaactgactggagagagttcactact
cccgaaggaagaaagtattacttcaataaagttaccaaacaatcgaaatgggccattcca
gacgaagtcaagttggctcgtgaaagggtgacaatgatttcatgtgaaggaaaaccatta
atgaaacatgttacttcccttgcctcagctggtgttcatacttctgagatcccggcttct
tttcccaatgcaaataattcatcttctcaaggtggtaaaacaattgtgtcaagcccagtt
tcagtggaacctgctgttaatccagaacctgcagccacttctggattatcaggcaaacta
gaggaggctgcttatacacaacaagatgtaacagggtcacatgatcctgtagaaactgct
tcttctattgttgcggcagatacatcagtcccgattgagcttgacagctctataacttca
ccaataagaactgctaaaggcatatcacctcgggaagctgcaccaccatctgttgatgaa
acttcaaatggaggtctggaggaaaccaatgaaatatttgtgatttctggaagcgggagc
atcattgcatctgaagagaaaaaagtagagcatggacctgtagtctatgagagtaaagag
gaggcgaagaatgctttcaaagttctcttggaaacagcaaatgtcggctctgattggaat
tgggaccaggccatgagagtgataataaatgaccggagatatggtgcactaagaactctc
ggtgaaagaaagcaagcttttaacgagtttgtgggacagaagaaaaaacaggaagttgaa
gagaggcgtgccagacagaagaaagcgcgggaagatttcaagaaaatgttagatgaatct
gaagatttgacttcatcaacaagatggggcaaagcagtatctatgcttgaacatgatgaa
cgttttcaagctgttgaacgagctaaagatcgtgaggacctctttgaagaccatttagag
gatctcaagaaaaaggaacgagcaaaggctttggaggagcgcaaacgtcacaagacagag
tatttggagtttctaaaatcttgtgattttatcaaggcgagtagccaatggcggaaaatt
caacatcgtttggaaactgatcagagatgctcacgcctagaaaaaattgagcgcttggaa
atcttccaagaatatatacgagatctagagttggtagaagaggaacaaagaaaattgaga
atggaggacatgaggaaagcagaacgtaaaaaccgtgatgaatttcgaaagctgatggaa
gaacatgttgttaatggcatacttactgccaatactcattggcgtgactattgtacaaag
gttaaagacatgcccgcgtatcttgcagtatcttcaaacacctcagggtctaaagcaaaa
gatctgtttgaggatgtcatagacgaccttgaaaaacagtatttggaggacaaggagaaa
attgaaggtgcgataaagaatgaaaagatatccttgtctacatcttgtactcttgaagac
ttcaaggctgcacttcagaaagcaattacatcagcaaaaatatctgagatcaatttaaag
cttgtgtataatgagttgttggaaataactaaagagaaagaagaaaaagaagctaagaag
cgtaaacgtctagctgaagatttctatgacttcctattcactttaaaggaaataacagca
tcctcgaagtgggaggattgcaaaccacttgttggagatcggtttcttggagatgaaagc
tttttccaggaaatctttgacaacttcattattgaactaaaagaaaaggcaaaagagaag
gagcgaaggagaagagaagaaaaggcaaagaaggaaaaaagaagagaggataaggagaga
aggaataaagatcggagagttgaaagcaaaaagggtagagagagacgtaagaaaggtgaa
accgacagtgacgactctaattctcacagttttgaagagaatagaaggtcgagagacaga
agcaagaaacatcggaagcggcgcatggactattttgatgataccaattttgatggtgac
gataaagataggtctaggtctcatagacacatcaccgataccaaaaaatcgaaactgatt
gagaagcaatcttgctccgcggatgtggatactgaaaacgagagtaagaaacacaaaagg
gataatcgggatggcaggaacgaggacgttgatgtcgaggagcataatgaagagccgtgc
gaggatggagaggttcgatag
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integrated database retrieval system
